Motif Name Consensus P-value Log P-value q-value (Benjamini) # of Target Sequences with Motif(of 258) % of Target Sequences with Motif # of Background Sequences with Motif(of 47047) % of Background Sequences with Motif CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer ATTGCGCAAC 1e-40 -9.305e+01 0.0000 89.0 34.50% 2987.5 6.35% HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer RTTATGYAAB 1e-22 -5.071e+01 0.0000 68.0 26.36% 3160.3 6.72% PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer VNAGGKCAAAGGTCA 1e-21 -4.937e+01 0.0000 80.0 31.01% 4443.0 9.44% PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer TGACCTTTGCCCCA 1e-20 -4.788e+01 0.0000 75.0 29.07% 4027.1 8.56% RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer TAGGGCAAAGGTCA 1e-18 -4.282e+01 0.0000 79.0 30.62% 4838.4 10.28% NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer VTTACGTAAYNNNNN 1e-17 -3.977e+01 0.0000 50.0 19.38% 2147.2 4.56% CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer DRTGTTGCAA 1e-15 -3.505e+01 0.0000 60.0 23.26% 3405.1 7.24% NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer YTGCCAAG 1e-11 -2.721e+01 0.0000 103.0 39.92% 9726.1 20.67% EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer NABTCCCWDGGGAVH 1e-10 -2.309e+01 0.0000 55.0 21.32% 3918.7 8.33% Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer MTGATGCAAT 1e-9 -2.146e+01 0.0000 26.0 10.08% 1081.8 2.30% Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer ATTGCATCAT 1e-7 -1.733e+01 0.0000 20.0 7.75% 803.5 1.71% HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer CARRGKBCAAAGTYCA 1e-3 -8.304e+00 0.0088 24.0 9.30% 1966.5 4.18% Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer MAATCACTGC 1e-3 -8.248e+00 0.0088 31.0 12.02% 2866.9 6.09% HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer TGCCAGCB 1e-3 -8.097e+00 0.0093 79.0 30.62% 10035.4 21.33% THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer TRAGGTCA 1e-3 -7.812e+00 0.0116 118.0 45.74% 16662.1 35.41% FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer WAAGTAAACA 1e-3 -7.327e+00 0.0176 45.0 17.44% 5009.1 10.65% STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer NYTTCCWGGAAR 1e-2 -6.699e+00 0.0310 41.0 15.89% 4575.5 9.72% EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer GTCCCCWGGGGA 1e-2 -6.492e+00 0.0360 39.0 15.12% 4333.4 9.21% NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer CYTGGCABNSTGCCAR 1e-2 -6.139e+00 0.0486 19.0 7.36% 1653.8 3.51% Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer GWAAYHTGAKMC 1e-2 -5.764e+00 0.0672 35.0 13.57% 3927.2 8.35% COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer GKBCARAGGTCA 1e-2 -5.514e+00 0.0821 43.0 16.67% 5188.8 11.03% RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer TTGAMCTTTG 1e-2 -5.394e+00 0.0884 86.0 33.33% 12169.8 25.86% AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer TGGCAGTTGG 1e-2 -5.365e+00 0.0884 54.0 20.93% 6943.6 14.76% Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer DGTAAACA 1e-2 -5.312e+00 0.0884 28.0 10.85% 3025.0 6.43% ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer VAGGTCACNSTGACC 1e-2 -5.110e+00 0.1033 11.0 4.26% 818.8 1.74% Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer CYTGTTTACWYW 1e-2 -5.097e+00 0.1033 30.0 11.63% 3363.1 7.15% Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer TGACCTTTNCNT 1e-2 -4.963e+00 0.1108 10.0 3.88% 720.8 1.53% Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer CAAAGGTCAG 1e-2 -4.900e+00 0.1138 67.0 25.97% 9213.3 19.58% Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer SVYTTCCNGGAARB 1e-2 -4.899e+00 0.1138 28.0 10.85% 3121.7 6.63% STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer ABTTCYYRRGAA 1e-1 -4.223e+00 0.2091 23.0 8.91% 2562.8 5.45% HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer BSTTCTRGAABVTTCYAGAA 1e-1 -4.057e+00 0.2388 8.0 3.10% 591.9 1.26% FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer TRTTTACTTW 1e-1 -4.040e+00 0.2388 34.0 13.18% 4261.0 9.06% FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer WWTRTAAACAVG 1e-1 -4.037e+00 0.2388 27.0 10.47% 3198.3 6.80% Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer WWATRTAAACAN 1e-1 -4.012e+00 0.2388 28.0 10.85% 3355.3 7.13% MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer WNTGCTGASTCAGCANWTTY 1e-1 -3.999e+00 0.2388 16.0 6.20% 1624.7 3.45% Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer NNNVCTGWGYAAACASN 1e-1 -3.956e+00 0.2388 33.0 12.79% 4133.9 8.79% Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer GGGGCTYGKCTGGGA 1e-1 -3.647e+00 0.3015 9.0 3.49% 762.7 1.62% STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer RTTTCTNAGAAA 1e-1 -3.626e+00 0.3015 15.0 5.81% 1561.1 3.32% STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer TTCCKNAGAA 1e-1 -3.516e+00 0.3260 22.0 8.53% 2597.6 5.52% GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer VAGRACAKWCTGTYC 1e-1 -3.464e+00 0.3348 9.0 3.49% 788.5 1.68% HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer TTCTAGAABNTTCTA 1e-1 -3.410e+00 0.3448 10.0 3.88% 925.8 1.97% Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer SCCTAGCAACAG 1e-1 -3.310e+00 0.3719 12.0 4.65% 1210.3 2.57% Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer TWGTCTGV 1e-1 -3.241e+00 0.3893 83.0 32.17% 12727.9 27.05% FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer WAAGTAAACA 1e-1 -3.036e+00 0.4672 30.0 11.63% 3982.8 8.46% RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer AAYTAGGTCA 1e-1 -3.035e+00 0.4672 6.0 2.33% 475.0 1.01% RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer AAYTAGGTCA 1e-1 -3.035e+00 0.4672 6.0 2.33% 475.0 1.01% ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer GRTGMTRGAGCC 1e-1 -2.950e+00 0.4766 17.0 6.59% 2008.7 4.27% FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer NVWTGTTTAC 1e-1 -2.933e+00 0.4766 32.0 12.40% 4340.3 9.22% NFY(CCAAT)/Promoter/Homer RGCCAATSRG 1e-1 -2.924e+00 0.4766 24.0 9.30% 3081.4 6.55% ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer GTGACCTTGRVN 1e-1 -2.900e+00 0.4766 24.0 9.30% 3089.4 6.57% FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer NYYTGTTTACHN 1e-1 -2.843e+00 0.4890 14.0 5.43% 1594.4 3.39% EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer DGTCCCYRGGGA 1e-1 -2.816e+00 0.4923 8.0 3.10% 759.2 1.61% Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer GGYAATGAAA 1e-1 -2.815e+00 0.4923 21.0 8.14% 2653.5 5.64% Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer TGTCANYT 1e-1 -2.726e+00 0.5189 95.0 36.82% 15154.5 32.21% EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer NRBCARRGGTCA 1e-1 -2.634e+00 0.5586 33.0 12.79% 4626.5 9.83% Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer NNNCTTTCCAGGAAA 1e-1 -2.613e+00 0.5601 45.0 17.44% 6615.6 14.06% ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer CTGCCWVCTTTTRTA 1e-1 -2.588e+00 0.5645 19.0 7.36% 2418.3 5.14% PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer TGGTACATTCCA 1e-1 -2.524e+00 0.5916 19.0 7.36% 2439.9 5.19% TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer CYRCATTCCA 1e-1 -2.443e+00 0.6301 31.0 12.02% 4385.9 9.32% COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer AGRGGTCA 1e-1 -2.428e+00 0.6301 41.0 15.89% 6045.0 12.85% Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer BSNTGTTTACWYWGN 1e-1 -2.403e+00 0.6345 11.0 4.26% 1263.2 2.68% PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer AAGAACATWHTGTTC 1e-1 -2.368e+00 0.6467 8.0 3.10% 840.9 1.79% ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer RCAGGATGTGGT 1e0 -2.252e+00 0.7145 4.0 1.55% 326.0 0.69% Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer TGWAAYCTGABACCB 1e0 -2.241e+00 0.7145 3.0 1.16% 207.7 0.44% Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer NAACAGCTGG 1e0 -2.238e+00 0.7145 30.0 11.63% 4316.8 9.17% Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer GATGASTCATCN 1e0 -2.203e+00 0.7164 7.0 2.71% 732.0 1.56% Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer TAATCCCN 1e0 -2.166e+00 0.7326 113.0 43.80% 18790.9 39.94% ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer RGRACASNSTGTYCYB 1e0 -2.150e+00 0.7329 8.0 3.10% 885.3 1.88% TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer TRCATTCCAG 1e0 -2.087e+00 0.7693 34.0 13.18% 5055.5 10.74% STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer NATTTCCNGGAAAT 1e0 -2.069e+00 0.7727 11.0 4.26% 1350.7 2.87% OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer ATGAATATTCATGAG 1e0 -2.055e+00 0.7727 1.0 0.39% 25.3 0.05% TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer GAGGTCAAAGGTCA 1e0 -1.970e+00 0.8291 4.0 1.55% 362.9 0.77% MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer GGCVGTTR 1e0 -1.926e+00 0.8542 49.0 18.99% 7700.8 16.37% Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer HTTTCCCASG 1e0 -1.918e+00 0.8542 43.0 16.67% 6676.9 14.19% ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer TTAACCCTTTVNKKN 1e0 -1.911e+00 0.8542 8.0 3.10% 940.4 2.00% TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer CCWGGAATGY 1e0 -1.848e+00 0.8870 25.0 9.69% 3679.6 7.82% BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer NHAACBGYYV 1e0 -1.841e+00 0.8870 43.0 16.67% 6726.2 14.29% GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer RGGATTAR 1e0 -1.830e+00 0.8870 29.0 11.24% 4356.9 9.26% AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer ATGCCCTGAGGC 1e0 -1.764e+00 0.9286 22.0 8.53% 3223.5 6.85% Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer TAAYCYAATCAA 1e0 -1.750e+00 0.9292 3.0 1.16% 261.7 0.56% PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer VAGRACAKNCTGTBC 1e0 -1.748e+00 0.9292 58.0 22.48% 9391.2 19.96% ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer AGGAARCAGCTG 1e0 -1.716e+00 0.9381 4.0 1.55% 401.6 0.85% Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer NANTGCSGCA 1e0 -1.698e+00 0.9442 6.0 2.33% 693.4 1.47% Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer CCTGCTGAGH 1e0 -1.684e+00 0.9456 22.0 8.53% 3262.5 6.93% CHR(?)/Hela-CellCycle-Expression/Homer SRGTTTCAAA 1e0 -1.682e+00 0.9456 21.0 8.14% 3097.7 6.58% ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer AGGCCTAG 1e0 -1.656e+00 0.9499 48.0 18.60% 7719.3 16.41% Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer GTRGGTCASTGGGTCA 1e0 -1.652e+00 0.9499 4.0 1.55% 412.4 0.88% RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer AAWCTAGGTCARDNN 1e0 -1.616e+00 0.9660 5.0 1.94% 563.0 1.20% p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer NRRRCAWGTCCDGRCATGYY 1e0 -1.613e+00 0.9660 2.0 0.78% 150.7 0.32% Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer YTAATTRAWWCCAGATGT 1e0 -1.611e+00 0.9660 6.0 2.33% 713.4 1.52% Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer ANTTMRCASBNNNGTGYKAAN 1e0 -1.598e+00 0.9660 8.0 3.10% 1023.2 2.17% FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer AGGTCANTGACCTB 1e0 -1.598e+00 0.9660 11.0 4.26% 1497.5 3.18% Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer KTGACCTTGA 1e0 -1.582e+00 0.9660 16.0 6.20% 2316.1 4.92% AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer CCAGGAACAG 1e0 -1.541e+00 0.9750 97.0 37.60% 16495.2 35.06% ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer ATTTCCCAGVAKSCY 1e0 -1.537e+00 0.9750 9.0 3.49% 1199.7 2.55% ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer RHHCAGAGAGGB 1e0 -1.536e+00 0.9750 2.0 0.78% 158.0 0.34% Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer NAHCAGCTGD 1e0 -1.487e+00 0.9978 35.0 13.57% 5591.0 11.88% FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer SCHTGTTTACAT 1e0 -1.478e+00 0.9978 18.0 6.98% 2697.5 5.73% TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer YCWGGAATGY 1e0 -1.474e+00 0.9978 20.0 7.75% 3035.8 6.45% Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer NATGASTCABNN 1e0 -1.453e+00 1.0000 8.0 3.10% 1067.5 2.27% bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer KCACGTGMCN 1e0 -1.452e+00 1.0000 6.0 2.33% 753.5 1.60% HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer RTACGTGC 1e0 -1.442e+00 1.0000 20.0 7.75% 3052.4 6.49% Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer NRAACCRGTTYRAACCRGYT 1e0 -1.429e+00 1.0000 4.0 1.55% 454.3 0.97% HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer TACGTGCV 1e0 -1.428e+00 1.0000 5.0 1.94% 605.4 1.29% Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer GKVTCADRTTWC 1e0 -1.401e+00 1.0000 7.0 2.71% 924.3 1.96% ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer NGNTCTAGAACCNGV 1e0 -1.364e+00 1.0000 10.0 3.88% 1421.9 3.02% CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer GCTAATCC 1e0 -1.298e+00 1.0000 57.0 22.09% 9603.3 20.41% ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer RGGGCACTAACY 1e0 -1.289e+00 1.0000 16.0 6.20% 2457.9 5.22% Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer GGCMATGAAA 1e0 -1.277e+00 1.0000 33.0 12.79% 5396.8 11.47% AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer SCCTSAGGSCAW 1e0 -1.270e+00 1.0000 27.0 10.47% 4357.5 9.26% Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer ATTTGCATAW 1e0 -1.269e+00 1.0000 13.0 5.04% 1960.4 4.17% THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer GGTCANYTGAGGWCA 1e0 -1.263e+00 1.0000 10.0 3.88% 1461.2 3.11% E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer BTKGGCGGGAAA 1e0 -1.259e+00 1.0000 9.0 3.49% 1297.8 2.76% Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer MCAGCTGBYH 1e0 -1.254e+00 1.0000 48.0 18.60% 8051.3 17.11% NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer GATGACTCAGCA 1e0 -1.253e+00 1.0000 2.0 0.78% 193.2 0.41% USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer SGTCACGTGR 1e0 -1.246e+00 1.0000 9.0 3.49% 1303.0 2.77% Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer TBGCACGCAA 1e0 -1.244e+00 1.0000 13.0 5.04% 1972.6 4.19% Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer YGGCCCCGCCCC 1e0 -1.238e+00 1.0000 28.0 10.85% 4553.8 9.68% Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer TYTGACCASWRG 1e0 -1.228e+00 1.0000 20.0 7.75% 3175.6 6.75% Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer VCAGCTGYTG 1e0 -1.211e+00 1.0000 28.0 10.85% 4573.4 9.72% Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer ATGCATAATTCA 1e0 -1.201e+00 1.0000 9.0 3.49% 1320.9 2.81% Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer NYTAATCCYB 1e0 -1.193e+00 1.0000 18.0 6.98% 2852.6 6.06% Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer TAATCHGATTAC 1e0 -1.191e+00 1.0000 1.0 0.39% 66.8 0.14% Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer TGTTKCCTAGCAACM 1e0 -1.184e+00 1.0000 28.0 10.85% 4593.6 9.76% HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer TWVGGTCCGC 1e0 -1.119e+00 1.0000 3.0 1.16% 367.7 0.78% n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer VRCCACGTGG 1e0 -1.074e+00 1.0000 13.0 5.04% 2060.0 4.38% Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer TGCTGAGTCA 1e0 -1.071e+00 1.0000 5.0 1.94% 703.3 1.49% GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer CRGCTGBNGNSNNSAGATAA 1e0 -1.070e+00 1.0000 3.0 1.16% 378.5 0.80% Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer GTCATGCHTGRCTGS 1e0 -1.063e+00 1.0000 8.0 3.10% 1209.9 2.57% ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer SMCAGTCWGAKGGAGGAGGC 1e0 -1.051e+00 1.0000 2.0 0.78% 225.5 0.48% DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer YDGHTACAWTGTADC 1e0 -1.022e+00 1.0000 5.0 1.94% 719.8 1.53% Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer CTGTTTAC 1e0 -1.006e+00 1.0000 49.0 18.99% 8476.4 18.01% ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer WDNCTGGGCA 1e0 -1.002e+00 1.0000 37.0 14.34% 6337.5 13.47% MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer GCTGASTCAGCA 1e0 -9.838e-01 1.0000 5.0 1.94% 732.1 1.56% MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer TGCTGACTCA 1e0 -9.759e-01 1.0000 20.0 7.75% 3344.3 7.11% Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer CTTCCGGGAA 1e0 -9.756e-01 1.0000 13.0 5.04% 2115.2 4.50% Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer CTGGCAGSCTGCCA 1e0 -9.521e-01 1.0000 12.0 4.65% 1954.3 4.15% Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer VGCTGWCAVB 1e0 -9.517e-01 1.0000 40.0 15.50% 6923.3 14.71% ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer GAGCCTGGTACTGWGCCTGR 1e0 -9.441e-01 1.0000 7.0 2.71% 1089.1 2.31% JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer RATGASTCAT 1e0 -9.350e-01 1.0000 12.0 4.65% 1964.8 4.18% Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer CTTTGATGTGSB 1e0 -9.328e-01 1.0000 9.0 3.49% 1441.3 3.06% NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer WNTGTTTRYTTTGGCA 1e0 -9.251e-01 1.0000 2.0 0.78% 249.9 0.53% HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer GCACGTACCC 1e0 -9.243e-01 1.0000 6.0 2.33% 925.6 1.97% Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer KGTTGCCATGGCAA 1e0 -9.062e-01 1.0000 5.0 1.94% 760.3 1.62% Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer GGATGACTCATC 1e0 -8.913e-01 1.0000 10.0 3.88% 1638.2 3.48% Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer BAACAGCTGT 1e0 -8.900e-01 1.0000 18.0 6.98% 3054.2 6.49% AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer VTGACTCATC 1e0 -8.898e-01 1.0000 16.0 6.20% 2699.4 5.74% ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer AGGCCTRG 1e0 -8.821e-01 1.0000 34.0 13.18% 5920.9 12.58% Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer DATGASTCATHN 1e0 -8.773e-01 1.0000 14.0 5.43% 2353.8 5.00% E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer GGCGGGAARN 1e0 -8.649e-01 1.0000 7.0 2.71% 1126.0 2.39% BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer NAMCAGCTGK 1e0 -8.400e-01 1.0000 36.0 13.95% 6324.1 13.44% IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer GAAASYGAAASY 1e0 -8.312e-01 1.0000 3.0 1.16% 441.3 0.94% MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer TTCAAAWTAAAAGTC 1e0 -8.311e-01 1.0000 6.0 2.33% 965.0 2.05% Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer NTAATTDGCYAATTANNWWD 1e0 -8.254e-01 1.0000 1.0 0.39% 105.1 0.22% THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer GGTCACCTGAGGTCA 1e0 -8.209e-01 1.0000 12.0 4.65% 2035.6 4.33% PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer YCCDNTCCAGGTTTT 1e0 -8.148e-01 1.0000 26.0 10.08% 4550.9 9.67% c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer VCCACGTG 1e0 -8.136e-01 1.0000 6.0 2.33% 973.5 2.07% Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer RCCACGTGGYYN 1e0 -8.133e-01 1.0000 12.0 4.65% 2040.9 4.34% ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer GCACAYAGTAGGKCY 1e0 -8.114e-01 1.0000 1.0 0.39% 107.9 0.23% GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer NRGVACABNVTGTYCY 1e0 -8.084e-01 1.0000 3.0 1.16% 448.6 0.95% Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer CACAGCAGGGGG 1e0 -8.031e-01 1.0000 15.0 5.81% 2584.2 5.49% Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer CCCCTCCCCCAC 1e0 -7.864e-01 1.0000 3.0 1.16% 455.6 0.97% BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer GNCACGTG 1e0 -7.863e-01 1.0000 37.0 14.34% 6566.0 13.95% NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer KCCACGTGAC 1e0 -7.690e-01 1.0000 21.0 8.14% 3692.9 7.85% RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer SAAACCACAG 1e0 -7.680e-01 1.0000 16.0 6.20% 2791.1 5.93% RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer AAACCACARM 1e0 -7.665e-01 1.0000 25.0 9.69% 4417.1 9.39% c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer VVCCACGTGG 1e0 -7.562e-01 1.0000 9.0 3.49% 1539.1 3.27% ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer AAGGKGRCGCAGGCA 1e0 -7.559e-01 1.0000 3.0 1.16% 465.4 0.99% NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer NVCACGTG 1e0 -7.312e-01 1.0000 32.0 12.40% 5723.1 12.16% Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer RGCCATTAAC 1e0 -7.235e-01 1.0000 108.0 41.86% 19556.9 41.56% p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer RRCATGYCYRGRCATGYYYN 1e0 -7.131e-01 1.0000 2.0 0.78% 300.8 0.64% p53(p53)/Saos-p53-ChIP-Seq/Homer RRCATGYCYRGRCATGYYYN 1e0 -7.131e-01 1.0000 2.0 0.78% 300.8 0.64% LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer RGGTTACTANAGGTCA 1e0 -6.945e-01 1.0000 1.0 0.39% 126.3 0.27% ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer AACATCTGGA 1e0 -6.921e-01 1.0000 12.0 4.65% 2126.2 4.52% HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer GTTAATNATTAA 1e0 -6.851e-01 1.0000 3.0 1.16% 490.3 1.04% Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer NNTGTGGATTSS 1e0 -6.662e-01 1.0000 13.0 5.04% 2329.7 4.95% SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer CAAGGHCANV 1e0 -6.552e-01 1.0000 10.0 3.88% 1788.1 3.80% IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer ACTGAAACCA 1e0 -6.525e-01 1.0000 10.0 3.88% 1790.3 3.80% Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer AAGCACTTAA 1e0 -6.395e-01 1.0000 57.0 22.09% 10406.0 22.12% BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer DATGASTCAT 1e0 -6.327e-01 1.0000 13.0 5.04% 2357.4 5.01% DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer TWGHWACAWTGTWDC 1e0 -6.259e-01 1.0000 5.0 1.94% 885.0 1.88% DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer NWTAAYCYAATCAWN 1e0 -6.134e-01 1.0000 1.0 0.39% 142.1 0.30% MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer AACAGCTG 1e0 -6.115e-01 1.0000 26.0 10.08% 4770.0 10.14% Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer GGGGGGGG 1e0 -6.083e-01 1.0000 20.0 7.75% 3670.0 7.80% ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer GGAACAGCCG 1e0 -6.072e-01 1.0000 16.0 6.20% 2934.0 6.24% p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer NNDRCATGYCYNRRCATGYH 1e0 -6.020e-01 1.0000 7.0 2.71% 1271.1 2.70% TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer CCWGGAATGY 1e0 -6.017e-01 1.0000 12.0 4.65% 2199.9 4.68% Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer GGTGYTGACAGS 1e0 -5.949e-01 1.0000 5.0 1.94% 902.4 1.92% TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer ACWTCAAAGG 1e0 -5.940e-01 1.0000 2.0 0.78% 337.1 0.72% Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer BTCAAGGTCA 1e0 -5.729e-01 1.0000 11.0 4.26% 2038.9 4.33% MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer RRCAGCTGYTSY 1e0 -5.685e-01 1.0000 19.0 7.36% 3528.3 7.50% RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer WAABTAGGTCAV 1e0 -5.629e-01 1.0000 2.0 0.78% 348.7 0.74% Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer HTGCTGAGTCAT 1e0 -5.525e-01 1.0000 1.0 0.39% 156.7 0.33% Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer YTGWCADY 1e0 -5.516e-01 1.0000 76.0 29.46% 14038.6 29.84% CRE(bZIP)/Promoter/Homer CSGTGACGTCAC 1e0 -5.482e-01 1.0000 3.0 1.16% 547.1 1.16% E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer CWGGCGGGAA 1e0 -5.468e-01 1.0000 2.0 0.78% 354.4 0.75% FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer TGTTTAYTTAGC 1e0 -5.395e-01 1.0000 20.0 7.75% 3747.6 7.96% NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer AWWWTGCTGAGTCAT 1e0 -5.366e-01 1.0000 1.0 0.39% 160.1 0.34% RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer GGGRAARRGRMCAGMTG 1e0 -5.316e-01 1.0000 7.0 2.71% 1320.5 2.81% Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer NNATGASTCATH 1e0 -5.288e-01 1.0000 10.0 3.88% 1889.4 4.02% E-box(bHLH)/Promoter/Homer SSGGTCACGTGA 1e0 -5.175e-01 1.0000 1.0 0.39% 165.8 0.35% SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer AVCAGCTG 1e0 -5.067e-01 1.0000 117.0 45.35% 21628.8 45.97% Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer GGCCYCCTGCTGDGH 1e0 -4.992e-01 1.0000 12.0 4.65% 2294.5 4.88% NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer ACCATCTGTT 1e0 -4.939e-01 1.0000 38.0 14.73% 7153.8 15.20% E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer VDTTTCCCGCCA 1e0 -4.853e-01 1.0000 1.0 0.39% 174.3 0.37% IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer GRAASTGAAAST 1e0 -4.724e-01 1.0000 7.0 2.71% 1367.0 2.91% RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer GCTGTGGTTW 1e0 -4.670e-01 1.0000 15.0 5.81% 2896.9 6.16% Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer SSCMATWAAA 1e0 -4.521e-01 1.0000 14.0 5.43% 2724.9 5.79% RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer AGGTCAAGGTCA 1e0 -4.469e-01 1.0000 2.0 0.78% 396.5 0.84% PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer ACTTTCACTTTC 1e0 -4.458e-01 1.0000 13.0 5.04% 2541.8 5.40% E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer GGCGGGAAAH 1e0 -4.383e-01 1.0000 4.0 1.55% 805.4 1.71% Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer NRYTTCCGGY 1e0 -4.373e-01 1.0000 8.0 3.10% 1590.2 3.38% ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer GARTGGTCATCGCCC 1e0 -4.370e-01 1.0000 1.0 0.39% 189.8 0.40% Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer AWWNTGCTGAGTCAT 1e0 -4.280e-01 1.0000 1.0 0.39% 193.0 0.41% Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer VNRVCAGCTGGY 1e0 -4.253e-01 1.0000 26.0 10.08% 5028.7 10.69% Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer TTRAGTGSYK 1e0 -4.188e-01 1.0000 50.0 19.38% 9521.4 20.24% ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer ARGAGGMCAAAATGW 1e0 -4.174e-01 1.0000 3.0 1.16% 617.4 1.31% PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer RGGTCTCTAACY 1e0 -4.126e-01 1.0000 5.0 1.94% 1023.6 2.18% Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer HDGYAATGAAAN 1e0 -3.988e-01 1.0000 44.0 17.05% 8447.5 17.95% GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer RACCGGAAGT 1e0 -3.969e-01 1.0000 17.0 6.59% 3367.4 7.16% YY1(Zf)/Promoter/Homer CAAGATGGCGGC 1e0 -3.866e-01 1.0000 1.0 0.39% 207.4 0.44% Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer YCATYAATCA 1e0 -3.820e-01 1.0000 19.0 7.36% 3771.6 8.02% Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer SCTGTCAVTCAV 1e0 -3.800e-01 1.0000 4.0 1.55% 847.4 1.80% Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer YTAATYNRATTA 1e0 -3.793e-01 1.0000 7.0 2.71% 1450.8 3.08% NRF(NRF)/Promoter/Homer STGCGCATGCGC 1e0 -3.738e-01 1.0000 1.0 0.39% 212.7 0.45% OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer YATGCATATRCATRT 1e0 -3.640e-01 1.0000 1.0 0.39% 216.7 0.46% Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer CYAAAAATAG 1e0 -3.472e-01 1.0000 8.0 3.10% 1683.0 3.58% OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer ATGCATWATGCATRW 1e0 -3.466e-01 1.0000 15.0 5.81% 3056.4 6.50% NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer GGAAATTCCC 1e0 -3.407e-01 1.0000 1.0 0.39% 226.1 0.48% MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer DGCACACGTG 1e0 -3.384e-01 1.0000 17.0 6.59% 3456.8 7.35% GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer AAACYKGTTWDACMRGTTTB 1e0 -3.356e-01 1.0000 7.0 2.71% 1496.3 3.18% CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer NTNATGCAAYMNNHTGMAAY 1e0 -3.342e-01 1.0000 3.0 1.16% 674.4 1.43% Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer TGACANARRCCAGRC 1e0 -3.309e-01 1.0000 10.0 3.88% 2100.6 4.46% PSE(SNAPc)/K562-mStart-Seq/Homer WAVTCACCMTAASYDAAAAG 1e0 -3.235e-01 1.0000 9.0 3.49% 1911.5 4.06% CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer GHCACGTG 1e0 -3.232e-01 1.0000 7.0 2.71% 1510.5 3.21% Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer GYMATAAAAH 1e0 -3.216e-01 1.0000 13.0 5.04% 2704.2 5.75% Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer RTCACSCCAY 1e0 -3.152e-01 1.0000 3.0 1.16% 689.4 1.47% KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer DGGGYGKGGC 1e0 -3.112e-01 1.0000 18.0 6.98% 3696.5 7.86% ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer AGTTTCASTTTC 1e0 -3.031e-01 1.0000 1.0 0.39% 244.1 0.52% PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer GCAGCCAAGCRTGACH 1e0 -3.025e-01 1.0000 6.0 2.33% 1330.3 2.83% SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer ASWTCCTGBT 1e0 -2.945e-01 1.0000 20.0 7.75% 4115.5 8.75% Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer GGTTAAWCATTAA 1e0 -2.924e-01 1.0000 2.0 0.78% 486.8 1.03% bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer KCACGTGMCN 1e0 -2.850e-01 1.0000 15.0 5.81% 3157.5 6.71% Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer BTCAAGGTCA 1e0 -2.846e-01 1.0000 13.0 5.04% 2763.5 5.87% Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer GCCACACCCA 1e0 -2.798e-01 1.0000 4.0 1.55% 936.4 1.99% Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer MACAGGAAGT 1e0 -2.772e-01 1.0000 5.0 1.94% 1151.9 2.45% PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer ACCRTGACTAATTNN 1e0 -2.759e-01 1.0000 3.0 1.16% 723.9 1.54% ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer TGGGGAAGGGCM 1e0 -2.675e-01 1.0000 14.0 5.43% 2991.1 6.36% IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer CTTTCANTATGACTV 1e0 -2.614e-01 1.0000 2.0 0.78% 510.1 1.08% GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer AGATGKDGAGATAAG 1e0 -2.569e-01 1.0000 1.0 0.39% 270.0 0.57% KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer MKGGGYGTGGCC 1e0 -2.563e-01 1.0000 14.0 5.43% 3012.1 6.40% NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer SARTGGAAAAWRTGAGTCAB 1e0 -2.550e-01 1.0000 3.0 1.16% 743.1 1.58% Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer CYHATAAAAN 1e0 -2.543e-01 1.0000 59.0 22.87% 11632.4 24.72% TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer SMCATCTGKH 1e0 -2.499e-01 1.0000 34.0 13.18% 6915.8 14.70% PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer GSCTGTCACTCA 1e0 -2.490e-01 1.0000 1.0 0.39% 275.4 0.59% LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer CCTTTGATST 1e0 -2.484e-01 1.0000 14.0 5.43% 3027.4 6.43% Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer TGATTRATGGCY 1e0 -2.481e-01 1.0000 3.0 1.16% 750.2 1.59% NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer ATTTTCCATT 1e0 -2.455e-01 1.0000 21.0 8.14% 4414.3 9.38% Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer HACTTCCGGY 1e0 -2.434e-01 1.0000 7.0 2.71% 1614.8 3.43% PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer GTCACGCTCSCTGM 1e0 -2.339e-01 1.0000 1.0 0.39% 285.9 0.61% CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer CCATATATGGNM 1e0 -2.313e-01 1.0000 5.0 1.94% 1208.3 2.57% PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer NGTGTTCAVTSAAGCGKAAA 1e0 -2.310e-01 1.0000 1.0 0.39% 287.6 0.61% ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer YTKGATAHAGTATTCTWGGTNGGCA 1e0 -2.212e-01 1.0000 1.0 0.39% 295.0 0.63% CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer NGYCATAAAWCH 1e0 -2.125e-01 1.0000 16.0 6.20% 3503.5 7.45% NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer WGGGGATTTCCC 1e0 -2.104e-01 1.0000 9.0 3.49% 2085.7 4.43% ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer TGGAACAGMA 1e0 -2.087e-01 1.0000 16.0 6.20% 3512.5 7.46% ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer GTCWGCTGTYYCTCT 1e0 -2.030e-01 1.0000 1.0 0.39% 308.7 0.66% OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer ATTTGCATAACAATG 1e0 -2.021e-01 1.0000 3.0 1.16% 802.4 1.71% Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer SCTGTCAMTCAN 1e0 -2.005e-01 1.0000 3.0 1.16% 804.6 1.71% HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer GYCATCMATCAT 1e0 -1.910e-01 1.0000 1.0 0.39% 318.6 0.68% Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer CVGTSCTCCC 1e0 -1.905e-01 1.0000 36.0 13.95% 7484.8 15.91% NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer GGGGGAATCCCC 1e0 -1.830e-01 1.0000 1.0 0.39% 325.7 0.69% PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer GGAAGTGAAAST 1e0 -1.830e-01 1.0000 3.0 1.16% 827.2 1.76% Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer AGGVNCCTTTGT 1e0 -1.820e-01 1.0000 17.0 6.59% 3781.5 8.04% Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer ATGMATATDC 1e0 -1.808e-01 1.0000 18.0 6.98% 3985.4 8.47% Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer GCCACRCCCACY 1e0 -1.801e-01 1.0000 3.0 1.16% 831.4 1.77% CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer AYAGTGCCMYCTRGTGGCCA 1e0 -1.744e-01 1.0000 1.0 0.39% 333.6 0.71% IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer GAAAGTGAAAGT 1e0 -1.720e-01 1.0000 2.0 0.78% 600.6 1.28% ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer GAGSCCGAGC 1e0 -1.720e-01 1.0000 2.0 0.78% 600.2 1.28% ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer ACCGGAAGTG 1e0 -1.688e-01 1.0000 18.0 6.98% 4020.2 8.54% Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer TAATCAATTA 1e0 -1.662e-01 1.0000 1.0 0.39% 341.2 0.73% Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer NGCGTGGGCGGR 1e0 -1.652e-01 1.0000 1.0 0.39% 342.4 0.73% EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer NWGGGTGTGGCY 1e0 -1.642e-01 1.0000 2.0 0.78% 610.5 1.30% WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer MCTCCCMCRCAB 1e0 -1.639e-01 1.0000 7.0 2.71% 1754.2 3.73% Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer GGCCATAAATCA 1e0 -1.617e-01 1.0000 8.0 3.10% 1974.8 4.20% GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer CTCCCTGGGAGGCCN 1e0 -1.552e-01 1.0000 23.0 8.91% 5065.8 10.77% Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer ATGAATATTC 1e0 -1.501e-01 1.0000 1.0 0.39% 358.6 0.76% Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer VGCCATAAAA 1e0 -1.485e-01 1.0000 55.0 21.32% 11299.2 24.01% KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer GGGGGTGTGTCC 1e0 -1.428e-01 1.0000 5.0 1.94% 1356.6 2.88% Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer RGCAATNAAA 1e0 -1.420e-01 1.0000 64.0 24.81% 13039.9 27.71% Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer GCTATTTTTAGC 1e0 -1.409e-01 1.0000 2.0 0.78% 643.2 1.37% X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer GGTTGCCATGGCAA 1e0 -1.294e-01 1.0000 1.0 0.39% 384.0 0.82% Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer ASWTCAAAGG 1e0 -1.292e-01 1.0000 4.0 1.55% 1154.4 2.45% Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer GTCACGTGGT 1e0 -1.261e-01 1.0000 3.0 1.16% 920.8 1.96% VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer ARAGGTCANWGAGTTCANNN 1e0 -1.260e-01 1.0000 2.0 0.78% 667.6 1.42% KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer RGKGGGCGKGGC 1e0 -1.259e-01 1.0000 22.0 8.53% 4976.3 10.58% Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer HNRAATCAAT 1e0 -1.251e-01 1.0000 6.0 2.33% 1624.0 3.45% Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer GATTTGCATA 1e0 -1.221e-01 1.0000 5.0 1.94% 1403.2 2.98% PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer ADGGYAGYAGCATCT 1e0 -1.173e-01 1.0000 7.0 2.71% 1869.0 3.97% Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer GATGACGTCA 1e0 -1.167e-01 1.0000 8.0 3.10% 2091.1 4.44% ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer ANCAGGAAGT 1e0 -1.160e-01 1.0000 13.0 5.04% 3166.5 6.73% Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer TATGCWAATBAV 1e0 -1.145e-01 1.0000 4.0 1.55% 1187.4 2.52% Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer CGGTCACSCCAC 1e0 -1.111e-01 1.0000 1.0 0.39% 409.0 0.87% ETS(ETS)/Promoter/Homer AACCGGAAGT 1e0 -1.099e-01 1.0000 3.0 1.16% 954.4 2.03% MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer HWWGTCAGCAWWTTT 1e0 -1.076e-01 1.0000 4.0 1.55% 1204.0 2.56% Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer NNVVCAGCTGBN 1e0 -1.038e-01 1.0000 32.0 12.40% 7080.0 15.05% Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer YSTGGGTGGTCT 1e0 -1.030e-01 1.0000 3.0 1.16% 970.6 2.06% Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer WATGCAAATGAG 1e0 -1.012e-01 1.0000 6.0 2.33% 1690.5 3.59% EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer VACAGGAAAT 1e0 -9.632e-02 1.0000 8.0 3.10% 2158.8 4.59% Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer TTTTATGGCM 1e0 -9.575e-02 1.0000 51.0 19.77% 10840.0 23.04% Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer TTAATTNAATTA 1e0 -9.571e-02 1.0000 2.0 0.78% 726.5 1.54% Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer TAATTAGN 1e0 -9.535e-02 1.0000 19.0 7.36% 4503.7 9.57% Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer ATATGCAAAT 1e0 -9.421e-02 1.0000 4.0 1.55% 1240.3 2.64% Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer NTAATBNAATTA 1e0 -9.199e-02 1.0000 9.0 3.49% 2396.4 5.09% Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer HAWGRGGCCM 1e0 -9.163e-02 1.0000 59.0 22.87% 12406.8 26.37% Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer RGKGGGCGGAGC 1e0 -8.946e-02 1.0000 10.0 3.88% 2626.2 5.58% NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer GCCATCTGTT 1e0 -8.849e-02 1.0000 15.0 5.81% 3703.4 7.87% RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer NWAACCACADNN 1e0 -8.839e-02 1.0000 13.0 5.04% 3279.5 6.97% EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer AVCAGGAAGT 1e0 -8.541e-02 1.0000 24.0 9.30% 5581.2 11.86% Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer RCCATMTGTT 1e0 -8.475e-02 1.0000 40.0 15.50% 8778.5 18.66% Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer NCYAATAAAA 1e0 -8.156e-02 1.0000 32.0 12.40% 7217.2 15.34% BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer CNNBRGCGCCCCCTGSTGGC 1e0 -8.118e-02 1.0000 1.0 0.39% 463.4 0.98% ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer AVCCGGAAGT 1e0 -7.936e-02 1.0000 5.0 1.94% 1529.9 3.25% HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer TTTTATKRGG 1e0 -7.757e-02 1.0000 18.0 6.98% 4391.8 9.33% Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer RSCACTYRAG 1e0 -7.730e-02 1.0000 60.0 23.26% 12713.1 27.02% ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer GTGGGCCCCA 1e0 -7.404e-02 1.0000 1.0 0.39% 479.0 1.02% Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer AAACMATTAN 1e0 -7.271e-02 1.0000 7.0 2.71% 2025.4 4.30% Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer GCTATTTTTGGM 1e0 -7.107e-02 1.0000 13.0 5.04% 3368.0 7.16% HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer NTATYGATCH 1e0 -7.048e-02 1.0000 7.0 2.71% 2035.7 4.33% KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer NRGCCCCRCCCHBNN 1e0 -6.916e-02 1.0000 3.0 1.16% 1067.7 2.27% MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer RTCATGTGAC 1e0 -6.628e-02 1.0000 12.0 4.65% 3178.0 6.75% Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer DCYAAAAATAGM 1e0 -6.166e-02 1.0000 5.0 1.94% 1601.8 3.40% Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer NNYTAATTAR 1e0 -5.945e-02 1.0000 20.0 7.75% 4930.1 10.48% bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer NAGTTTCABTHTGACTNW 1e0 -5.633e-02 1.0000 6.0 2.33% 1869.2 3.97% Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer NDGTAATTAC 1e0 -5.632e-02 1.0000 10.0 3.88% 2794.2 5.94% Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer NGRTGACGTCAY 1e0 -5.352e-02 1.0000 4.0 1.55% 1390.5 2.96% Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer TATTGAYY 1e0 -5.318e-02 1.0000 14.0 5.43% 3699.9 7.86% TATA-Box(TBP)/Promoter/Homer CCTTTTAWAGSC 1e0 -5.180e-02 1.0000 22.0 8.53% 5411.5 11.50% LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer NGCTAATTAG 1e0 -4.839e-02 1.0000 25.0 9.69% 6066.8 12.89% EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer ATTTCCTGTN 1e0 -4.090e-02 1.0000 11.0 4.26% 3133.3 6.66% HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer TGATKGATGR 1e0 -3.679e-02 1.0000 2.0 0.78% 929.8 1.98% CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer TATCGATNAN 1e0 -3.576e-02 1.0000 8.0 3.10% 2485.8 5.28% Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer VBSYGTCTGG 1e0 -3.442e-02 1.0000 24.0 9.30% 6016.7 12.79% Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer NRRTGACGTCAT 1e0 -3.250e-02 1.0000 2.0 0.78% 955.6 2.03% Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer AGGTGHCAGACA 1e0 -3.208e-02 1.0000 1.0 0.39% 626.8 1.33% PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer RTGATTKATRGN 1e0 -3.201e-02 1.0000 10.0 3.88% 2989.1 6.35% ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer AACCGGAAGT 1e0 -2.829e-02 1.0000 21.0 8.14% 5467.6 11.62% Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer ADBTAATTAR 1e0 -2.717e-02 1.0000 30.0 11.63% 7374.3 15.67% Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer AGGTGTCA 1e0 -2.669e-02 1.0000 62.0 24.03% 13760.6 29.25% Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer CTAATKGV 1e0 -2.512e-02 1.0000 36.0 13.95% 8642.2 18.37% E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer DNRCAGCTGY 1e0 -2.372e-02 1.0000 26.0 10.08% 6603.8 14.03% Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer ACTTCCKGKT 1e0 -2.151e-02 1.0000 14.0 5.43% 4041.6 8.59% Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer AAGGTGTKAA 1e0 -2.087e-02 1.0000 23.0 8.91% 6023.8 12.80% Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer SAGATAAGRV 1e0 -2.069e-02 1.0000 6.0 2.33% 2157.0 4.58% ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer ACAGGAAGTG 1e0 -1.705e-02 1.0000 27.0 10.47% 6959.6 14.79% Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer BTBRAGTGSN 1e0 -1.690e-02 1.0000 36.0 13.95% 8834.3 18.78% Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer CTGTCTGG 1e0 -1.523e-02 1.0000 23.0 8.91% 6154.0 13.08% Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer TGCGTGGGYG 1e0 -1.311e-02 1.0000 4.0 1.55% 1743.9 3.71% HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer VCAGCTGBNN 1e0 -1.239e-02 1.0000 34.0 13.18% 8565.9 18.20% Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer NNAYTTCCTGHN 1e0 -1.225e-02 1.0000 12.0 4.65% 3775.9 8.02% Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer CCATTGTTNY 1e0 -1.204e-02 1.0000 28.0 10.85% 7320.4 15.56% Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer AGGTGTGAAA 1e0 -1.175e-02 1.0000 14.0 5.43% 4254.4 9.04% Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer BCCATTGTTC 1e0 -1.045e-02 1.0000 12.0 4.65% 3827.4 8.13% Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer NRYTTCCGGH 1e0 -7.782e-03 1.0000 13.0 5.04% 4159.2 8.84% Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer BBCTTATCTS 1e0 -7.632e-03 1.0000 6.0 2.33% 2426.9 5.16% c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer ATGACGTCATCY 1e0 -6.879e-03 1.0000 1.0 0.39% 900.4 1.91% Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer AGGTGTGAAM 1e0 -5.888e-03 1.0000 13.0 5.04% 4249.7 9.03% Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer ACAGCTGTTN 1e0 -5.842e-03 1.0000 49.0 18.99% 11976.2 25.45% Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer GKTAATGR 1e0 -5.637e-03 1.0000 47.0 18.22% 11589.0 24.63% Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer YCTTTGTTCC 1e0 -5.620e-03 1.0000 11.0 4.26% 3782.4 8.04% ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer ACVAGGAAGT 1e0 -5.599e-03 1.0000 8.0 3.10% 3033.2 6.45% Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer ATTAACACCT 1e0 -5.376e-03 1.0000 37.0 14.34% 9555.9 20.31% Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer RAACAATGGN 1e0 -5.102e-03 1.0000 15.0 5.81% 4767.7 10.13% PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer MGGAAGTGAAAC 1e0 -5.034e-03 1.0000 20.0 7.75% 5917.5 12.58% SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer AAAGRGGAAGTG 1e0 -4.342e-03 1.0000 1.0 0.39% 982.3 2.09% Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer SSRGCAGCTGCH 1e0 -3.039e-03 1.0000 15.0 5.81% 4935.4 10.49% IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer AGTTTCAKTTTC 1e0 -2.658e-03 1.0000 2.0 0.78% 1465.0 3.11% TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer AGATAAGANN 1e0 -1.580e-03 1.0000 28.0 10.85% 8113.8 17.24% Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer RRSCACTYAA 1e0 -1.516e-03 1.0000 37.0 14.34% 10069.9 21.40% PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer AGAGGAAGTG 1e0 -1.329e-03 1.0000 3.0 1.16% 1952.7 4.15% Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer YCTTATCTBN 1e0 -1.185e-03 1.0000 8.0 3.10% 3449.8 7.33% Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer CCWTTGTYYB 1e0 -1.164e-03 1.0000 24.0 9.30% 7330.3 15.58% GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer AGATAASR 1e0 -1.152e-03 1.0000 18.0 6.98% 5953.0 12.65% SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer GCAACAGGTG 1e0 -1.077e-03 1.0000 1.0 0.39% 1230.9 2.62% LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer AAGACCCYYN 1e0 -8.260e-04 1.0000 14.0 5.43% 5090.6 10.82% Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer NBWGATAAGR 1e0 -6.520e-04 1.0000 9.0 3.49% 3873.9 8.23% ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer ACAGGAAGTG 1e0 -5.330e-04 1.0000 10.0 3.88% 4192.4 8.91% Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer DAGGTGTBAA 1e0 -4.440e-04 1.0000 11.0 4.26% 4503.6 9.57% Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer CCATTGTTYB 1e0 -1.000e-04 1.0000 5.0 1.94% 3157.1 6.71% Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer CCWTTGTY 1e0 -9.100e-05 1.0000 23.0 8.91% 7910.1 16.81% Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer SNGCACCTGCHS 1e0 -2.000e-06 1.0000 1.0 0.39% 2339.6 4.97% ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer GNMCAGGTGTGC 1e0 -0.000e+00 1.0000 1.0 0.39% 3823.2 8.13% ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer VCAGGTRDRY 1e0 -0.000e+00 1.0000 6.0 2.33% 7272.2 15.46% E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer NVCACCTGBN 1e0 -0.000e+00 1.0000 3.0 1.16% 6060.5 12.88% FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer AGTAAACAAAAAAGAACAND 1e0 0.000e+00 1.0000 0.0 0.00% 199.0 0.42% CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer TGCAGTTCCMVNWRTGGCCA 1e0 0.000e+00 1.0000 0.0 0.00% 66.6 0.14% Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer ACTYKNATTCGTGNTACTTC 1e0 0.000e+00 1.0000 0.0 0.00% 225.1 0.48% RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer RGGTCADNNAGAGGTCAV 1e0 0.000e+00 1.0000 0.0 0.00% 102.5 0.22% DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer BCWGATTCAATCAAN 1e0 0.000e+00 1.0000 0.0 0.00% 12.6 0.03% E2F(E2F)/Hela-CellCycle-Expression/Homer TTSGCGCGAAAA 1e0 0.000e+00 1.0000 0.0 0.00% 100.7 0.21% EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer GGYAGCAYDTGCTDCCCNNN 1e0 0.000e+00 1.0000 0.0 0.00% 58.1 0.12% GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer AGATSTNDNNDSAGATAASN 1e0 0.000e+00 1.0000 0.0 0.00% 225.3 0.48% GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer NNNNNBAGATAWYATCTVHN 1e0 0.000e+00 1.0000 0.0 0.00% 470.1 1.00% GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer NAGATWNBNATCTNN 1e0 0.000e+00 1.0000 0.0 0.00% 255.9 0.54% GFX(?)/Promoter/Homer ATTCTCGCGAGA 1e0 0.000e+00 1.0000 0.0 0.00% 15.5 0.03% GFY(?)/Promoter/Homer ACTACAATTCCC 1e0 0.000e+00 1.0000 0.0 0.00% 227.8 0.48% GFY-Staf(?,Zf)/Promoter/Homer RACTACAATTCCCAGAAKGC 1e0 0.000e+00 1.0000 0.0 0.00% 115.7 0.25% GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer CGTGGGTGGTCC 1e0 0.000e+00 1.0000 0.0 0.00% 381.8 0.81% JunD(bZIP)/K562-JunD-ChIP-Seq/Homer ATGACGTCATCN 1e0 0.000e+00 1.0000 0.0 0.00% 210.4 0.45% NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer CTGCGCATGCGC 1e0 0.000e+00 1.0000 0.0 0.00% 93.3 0.20% Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer CCATTGTATGCAAAT 1e0 0.000e+00 1.0000 0.0 0.00% 590.7 1.26% OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer ATGAATWATTCATGA 1e0 0.000e+00 1.0000 0.0 0.00% 56.8 0.12% p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer ACATGCCCGGGCAT 1e0 0.000e+00 1.0000 0.0 0.00% 40.7 0.09% RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer AGGTCAAGGTCA 1e0 0.000e+00 1.0000 0.0 0.00% 91.3 0.19% REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer GGMGCTGTCCATGGTGCTGA 1e0 0.000e+00 1.0000 0.0 0.00% 23.1 0.05% Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer GTTGCCATGGCAACM 1e0 0.000e+00 1.0000 0.0 0.00% 272.7 0.58% RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer CGGTTGCCATGGCAAC 1e0 0.000e+00 1.0000 0.0 0.00% 229.0 0.49% Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer RACTACAACTCCCAGVAKGC 1e0 0.000e+00 1.0000 0.0 0.00% 47.3 0.10% Sp1(Zf)/Promoter/Homer GGCCCCGCCCCC 1e0 0.000e+00 1.0000 0.0 0.00% 341.6 0.73% T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer ACTTTCGTTTCT 1e0 0.000e+00 1.0000 0.0 0.00% 55.6 0.12% TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer GTCACGTGACYV 1e0 0.000e+00 1.0000 0.0 0.00% 207.0 0.44% Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer VCAKCTGGNNNCCAGMTGBN 1e0 0.000e+00 1.0000 0.0 0.00% 536.9 1.14% ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer GGVTCTCGCGAGAAC 1e0 0.000e+00 1.0000 0.0 0.00% 37.8 0.08% ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer GGGTTTTGAAGGATGARTAGGAGTT 1e0 0.000e+00 1.0000 0.0 0.00% 8.7 0.02% ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer MACCTTCYATGGCTCCCTAKTGCCY 1e0 0.000e+00 1.0000 0.0 0.00% 34.7 0.07% ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer GNCTGTASTRNTGBCTCHTT 1e0 0.000e+00 1.0000 0.0 0.00% 102.3 0.22% ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer CCTCATGGTGYCYTWYTCCCTTGTG 1e0 0.000e+00 1.0000 0.0 0.00% 66.4 0.14% ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer AGAAATGACTTCCCT 1e0 0.000e+00 1.0000 0.0 0.00% 24.8 0.05%