Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2385)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44734)	% of Background Sequences with Motif
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-105	-2.418e+02	0.0000	901.0	37.78%	8342.8	18.65%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-99	-2.295e+02	0.0000	1366.0	57.27%	16033.4	35.84%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-94	-2.173e+02	0.0000	1288.0	54.00%	14922.6	33.36%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-89	-2.056e+02	0.0000	1298.0	54.42%	15334.9	34.28%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-65	-1.505e+02	0.0000	553.0	23.19%	4853.5	10.85%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-61	-1.410e+02	0.0000	444.0	18.62%	3571.5	7.98%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-57	-1.334e+02	0.0000	570.0	23.90%	5351.4	11.96%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-57	-1.318e+02	0.0000	702.0	29.43%	7276.4	16.27%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-54	-1.247e+02	0.0000	519.0	21.76%	4791.2	10.71%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-53	-1.221e+02	0.0000	395.0	16.56%	3203.0	7.16%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-46	-1.066e+02	0.0000	310.0	13.00%	2357.6	5.27%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-45	-1.055e+02	0.0000	733.0	30.73%	8302.8	18.56%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-45	-1.039e+02	0.0000	285.0	11.95%	2092.1	4.68%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-44	-1.034e+02	0.0000	469.0	19.66%	4463.4	9.98%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-41	-9.608e+01	0.0000	781.0	32.75%	9288.5	20.77%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-40	-9.272e+01	0.0000	299.0	12.54%	2398.8	5.36%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-39	-9.192e+01	0.0000	183.0	7.67%	1087.3	2.43%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-33	-7.767e+01	0.0000	533.0	22.35%	5902.1	13.19%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-33	-7.617e+01	0.0000	783.0	32.83%	9870.8	22.07%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-31	-7.362e+01	0.0000	175.0	7.34%	1172.0	2.62%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-28	-6.523e+01	0.0000	98.0	4.11%	467.2	1.04%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-26	-6.105e+01	0.0000	896.0	37.57%	12262.2	27.41%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-24	-5.629e+01	0.0000	151.0	6.33%	1088.5	2.43%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-23	-5.521e+01	0.0000	359.0	15.05%	3857.8	8.62%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-21	-4.940e+01	0.0000	188.0	7.88%	1626.3	3.64%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-20	-4.782e+01	0.0000	673.0	28.22%	8993.9	20.11%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-20	-4.725e+01	0.0000	711.0	29.81%	9647.0	21.57%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-19	-4.454e+01	0.0000	1155.0	48.43%	17540.6	39.21%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-19	-4.426e+01	0.0000	697.0	29.22%	9528.8	21.30%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-15	-3.643e+01	0.0000	126.0	5.28%	1044.4	2.33%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-14	-3.282e+01	0.0000	113.0	4.74%	936.5	2.09%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-12	-2.792e+01	0.0000	588.0	24.65%	8398.6	18.78%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-11	-2.658e+01	0.0000	105.0	4.40%	931.6	2.08%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-11	-2.608e+01	0.0000	175.0	7.34%	1894.4	4.24%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-11	-2.599e+01	0.0000	203.0	8.51%	2302.6	5.15%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-11	-2.595e+01	0.0000	1357.0	56.90%	22333.7	49.93%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-10	-2.491e+01	0.0000	260.0	10.90%	3191.6	7.14%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-10	-2.462e+01	0.0000	69.0	2.89%	519.3	1.16%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-10	-2.383e+01	0.0000	656.0	27.51%	9772.1	21.85%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-10	-2.348e+01	0.0000	298.0	12.49%	3832.0	8.57%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-10	-2.346e+01	0.0000	204.0	8.55%	2387.5	5.34%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-9	-2.259e+01	0.0000	319.0	13.38%	4199.0	9.39%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-9	-2.176e+01	0.0000	435.0	18.24%	6128.9	13.70%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-9	-2.122e+01	0.0000	287.0	12.03%	3743.9	8.37%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-8	-2.033e+01	0.0000	103.0	4.32%	1017.6	2.27%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-8	-2.017e+01	0.0000	557.0	23.35%	8273.6	18.50%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-8	-1.993e+01	0.0000	259.0	10.86%	3349.7	7.49%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-8	-1.979e+01	0.0000	86.0	3.61%	801.5	1.79%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-8	-1.959e+01	0.0000	570.0	23.90%	8530.4	19.07%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-8	-1.913e+01	0.0000	87.0	3.65%	826.7	1.85%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-8	-1.868e+01	0.0000	375.0	15.72%	5281.1	11.81%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-7	-1.760e+01	0.0000	1053.0	44.15%	17283.2	38.64%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-7	-1.678e+01	0.0000	278.0	11.66%	3781.2	8.45%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-7	-1.642e+01	0.0000	258.0	10.82%	3474.8	7.77%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-6	-1.591e+01	0.0000	264.0	11.07%	3593.3	8.03%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-6	-1.549e+01	0.0000	159.0	6.67%	1954.7	4.37%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-6	-1.544e+01	0.0000	78.0	3.27%	777.0	1.74%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-6	-1.482e+01	0.0000	190.0	7.97%	2458.4	5.50%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-6	-1.430e+01	0.0000	101.0	4.23%	1126.9	2.52%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-5	-1.375e+01	0.0000	471.0	19.75%	7186.3	16.07%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-5	-1.300e+01	0.0000	256.0	10.73%	3599.2	8.05%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-5	-1.229e+01	0.0000	223.0	9.35%	3094.1	6.92%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-5	-1.212e+01	0.0000	356.0	14.93%	5321.5	11.90%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-4	-1.095e+01	0.0001	182.0	7.63%	2492.0	5.57%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-4	-1.091e+01	0.0001	378.0	15.85%	5776.5	12.91%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-4	-1.065e+01	0.0002	97.0	4.07%	1171.2	2.62%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-4	-1.032e+01	0.0002	798.0	33.46%	13269.5	29.67%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-4	-1.017e+01	0.0002	208.0	8.72%	2954.5	6.61%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-4	-1.006e+01	0.0003	472.0	19.79%	7472.8	16.71%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-4	-1.006e+01	0.0003	454.0	19.04%	7157.8	16.00%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-4	-1.004e+01	0.0003	108.0	4.53%	1360.0	3.04%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-4	-9.720e+00	0.0004	139.0	5.83%	1857.9	4.15%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-4	-9.664e+00	0.0004	90.0	3.77%	1097.3	2.45%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-4	-9.601e+00	0.0004	383.0	16.06%	5956.5	13.32%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-4	-9.531e+00	0.0004	159.0	6.67%	2186.5	4.89%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-3	-9.096e+00	0.0006	137.0	5.74%	1852.2	4.14%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-3	-9.092e+00	0.0006	103.0	4.32%	1316.8	2.94%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-3	-8.971e+00	0.0007	187.0	7.84%	2672.0	5.97%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-3	-8.943e+00	0.0007	48.0	2.01%	503.2	1.13%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-3	-8.910e+00	0.0007	19.0	0.80%	132.7	0.30%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-3	-8.780e+00	0.0008	283.0	11.87%	4295.6	9.60%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-3	-8.757e+00	0.0008	469.0	19.66%	7528.2	16.83%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-3	-8.497e+00	0.0011	162.0	6.79%	2285.7	5.11%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-3	-8.414e+00	0.0011	393.0	16.48%	6223.8	13.91%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-3	-8.382e+00	0.0012	279.0	11.70%	4254.4	9.51%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-3	-8.185e+00	0.0014	102.0	4.28%	1335.9	2.99%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-3	-8.170e+00	0.0014	78.0	3.27%	964.1	2.16%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-3	-8.133e+00	0.0014	149.0	6.25%	2091.3	4.68%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-3	-8.102e+00	0.0015	426.0	17.86%	6828.0	15.26%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-3	-8.021e+00	0.0016	198.0	8.30%	2907.0	6.50%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-3	-7.934e+00	0.0017	195.0	8.18%	2862.7	6.40%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-7.795e+00	0.0019	318.0	13.33%	4968.2	11.11%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-3	-7.725e+00	0.0020	138.0	5.79%	1932.7	4.32%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-3	-7.713e+00	0.0020	179.0	7.51%	2608.4	5.83%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-3	-7.399e+00	0.0028	86.0	3.61%	1115.4	2.49%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-3	-7.364e+00	0.0028	312.0	13.08%	4898.2	10.95%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-3	-7.346e+00	0.0028	171.0	7.17%	2496.4	5.58%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-3	-7.200e+00	0.0033	300.0	12.58%	4703.7	10.52%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-7.196e+00	0.0033	529.0	22.18%	8742.8	19.55%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-3	-7.191e+00	0.0033	452.0	18.95%	7371.8	16.48%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-6.799e+00	0.0047	442.0	18.53%	7232.2	16.17%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-6.390e+00	0.0070	35.0	1.47%	379.8	0.85%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-6.231e+00	0.0082	187.0	7.84%	2835.2	6.34%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-2	-6.204e+00	0.0083	247.0	10.36%	3865.3	8.64%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-6.117e+00	0.0090	1023.0	42.89%	17895.3	40.01%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-6.062e+00	0.0094	174.0	7.30%	2626.5	5.87%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-2	-5.943e+00	0.0105	308.0	12.91%	4949.1	11.06%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-2	-5.890e+00	0.0110	229.0	9.60%	3579.9	8.00%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-5.848e+00	0.0113	145.0	6.08%	2151.3	4.81%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-2	-5.767e+00	0.0122	476.0	19.96%	7948.4	17.77%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-2	-5.742e+00	0.0124	132.0	5.53%	1940.1	4.34%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2	-5.666e+00	0.0132	242.0	10.15%	3822.6	8.55%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-5.528e+00	0.0151	69.0	2.89%	922.6	2.06%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-5.364e+00	0.0176	188.0	7.88%	2914.6	6.52%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-2	-5.356e+00	0.0176	33.0	1.38%	376.7	0.84%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-2	-5.207e+00	0.0202	122.0	5.12%	1805.6	4.04%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-2	-4.973e+00	0.0253	183.0	7.67%	2858.4	6.39%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-2	-4.946e+00	0.0258	64.0	2.68%	867.2	1.94%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-4.849e+00	0.0282	24.0	1.01%	259.4	0.58%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-2	-4.687e+00	0.0329	30.0	1.26%	350.3	0.78%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-4.542e+00	0.0377	87.0	3.65%	1261.0	2.82%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-4.491e+00	0.0393	62.0	2.60%	855.8	1.91%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-4.415e+00	0.0421	65.0	2.73%	907.7	2.03%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-4.161e+00	0.0538	40.0	1.68%	519.2	1.16%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-4.123e+00	0.0554	354.0	14.84%	5956.5	13.32%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-3.943e+00	0.0658	170.0	7.13%	2718.6	6.08%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-3.917e+00	0.0671	107.0	4.49%	1635.8	3.66%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-3.886e+00	0.0686	12.0	0.50%	113.3	0.25%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-3.796e+00	0.0745	248.0	10.40%	4104.8	9.18%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-3.748e+00	0.0776	339.0	14.21%	5734.4	12.82%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-1	-3.631e+00	0.0865	503.0	21.09%	8717.7	19.49%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.587e+00	0.0898	87.0	3.65%	1318.3	2.95%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-3.438e+00	0.1033	10.0	0.42%	94.9	0.21%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-3.373e+00	0.1095	277.0	11.61%	4670.7	10.44%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-3.365e+00	0.1096	160.0	6.71%	2596.2	5.80%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-1	-3.275e+00	0.1190	438.0	18.36%	7590.0	16.97%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-3.271e+00	0.1190	551.0	23.10%	9652.7	21.58%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.218e+00	0.1242	62.0	2.60%	920.7	2.06%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-1	-3.189e+00	0.1269	126.0	5.28%	2018.6	4.51%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.117e+00	0.1354	41.0	1.72%	578.4	1.29%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-1	-3.100e+00	0.1368	84.0	3.52%	1300.7	2.91%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-3.097e+00	0.1368	174.0	7.30%	2869.9	6.42%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.094e+00	0.1368	118.0	4.95%	1887.6	4.22%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-1	-3.074e+00	0.1375	363.0	15.22%	6260.8	14.00%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-3.045e+00	0.1405	47.0	1.97%	680.0	1.52%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-3.029e+00	0.1417	119.0	4.99%	1910.1	4.27%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.986e+00	0.1469	136.0	5.70%	2211.5	4.94%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.976e+00	0.1475	122.0	5.12%	1967.7	4.40%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-1	-2.970e+00	0.1475	157.0	6.58%	2582.9	5.77%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.927e+00	0.1528	43.0	1.80%	620.9	1.39%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-2.912e+00	0.1542	39.0	1.64%	555.4	1.24%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-1	-2.890e+00	0.1565	467.0	19.58%	8182.7	18.29%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-1	-2.862e+00	0.1599	272.0	11.40%	4648.0	10.39%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.846e+00	0.1614	163.0	6.83%	2701.7	6.04%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-2.811e+00	0.1661	599.0	25.12%	10617.9	23.74%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-1	-2.800e+00	0.1669	389.0	16.31%	6775.9	15.15%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.789e+00	0.1675	171.0	7.17%	2849.4	6.37%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-2.788e+00	0.1675	211.0	8.85%	3562.8	7.96%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.786e+00	0.1675	889.0	37.27%	15986.8	35.74%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.776e+00	0.1675	105.0	4.40%	1688.7	3.78%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.729e+00	0.1736	100.0	4.19%	1605.5	3.59%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-1	-2.720e+00	0.1740	191.0	8.01%	3213.6	7.18%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.710e+00	0.1747	18.0	0.75%	227.2	0.51%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.702e+00	0.1750	49.0	2.05%	732.1	1.64%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.587e+00	0.1952	82.0	3.44%	1304.9	2.92%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-1	-2.521e+00	0.2073	300.0	12.58%	5203.7	11.63%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-2.513e+00	0.2076	73.0	3.06%	1154.3	2.58%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-1	-2.503e+00	0.2086	486.0	20.38%	8601.3	19.23%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-2.434e+00	0.2220	159.0	6.67%	2676.6	5.98%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.405e+00	0.2273	39.0	1.64%	581.1	1.30%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-2.404e+00	0.2273	222.0	9.31%	3810.9	8.52%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-2.378e+00	0.2308	18.0	0.75%	239.0	0.53%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.371e+00	0.2311	6.0	0.25%	58.3	0.13%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-1	-2.321e+00	0.2416	117.0	4.91%	1942.5	4.34%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-2.314e+00	0.2417	136.0	5.70%	2280.2	5.10%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-2.308e+00	0.2418	45.0	1.89%	688.2	1.54%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.295e+00	0.2437	132.0	5.53%	2211.9	4.94%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.292e+00	0.2437	44.0	1.84%	672.8	1.50%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.280e+00	0.2446	34.0	1.43%	504.4	1.13%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.278e+00	0.2446	5.0	0.21%	46.5	0.10%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.263e+00	0.2460	48.0	2.01%	742.5	1.66%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.225e+00	0.2541	63.0	2.64%	1003.4	2.24%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.162e+00	0.2691	222.0	9.31%	3845.6	8.60%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.158e+00	0.2691	65.0	2.73%	1043.4	2.33%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.122e+00	0.2771	23.0	0.96%	329.3	0.74%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.103e+00	0.2809	17.0	0.71%	232.3	0.52%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.080e+00	0.2861	21.0	0.88%	298.9	0.67%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-2.016e+00	0.3031	126.0	5.28%	2136.1	4.78%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.979e+00	0.3131	31.0	1.30%	470.4	1.05%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.978e+00	0.3131	32.0	1.34%	487.5	1.09%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.978e+00	0.3131	32.0	1.34%	487.5	1.09%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.969e+00	0.3131	202.0	8.47%	3512.1	7.85%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.958e+00	0.3131	25.0	1.05%	370.3	0.83%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.914e+00	0.3255	4.0	0.17%	38.5	0.09%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.902e+00	0.3277	183.0	7.67%	3178.6	7.11%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.884e+00	0.3318	233.0	9.77%	4089.2	9.14%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.842e+00	0.3444	25.0	1.05%	376.1	0.84%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.833e+00	0.3458	187.0	7.84%	3261.3	7.29%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.818e+00	0.3493	13.0	0.55%	178.4	0.40%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.815e+00	0.3493	166.0	6.96%	2883.5	6.45%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.809e+00	0.3493	82.0	3.44%	1375.0	3.07%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.800e+00	0.3504	41.0	1.72%	653.2	1.46%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.778e+00	0.3564	315.0	13.21%	5608.4	12.54%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.744e+00	0.3667	64.0	2.68%	1061.6	2.37%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.735e+00	0.3684	48.0	2.01%	780.0	1.74%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.728e+00	0.3689	110.0	4.61%	1884.9	4.21%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.694e+00	0.3802	93.0	3.90%	1583.4	3.54%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.685e+00	0.3818	126.0	5.28%	2178.4	4.87%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.681e+00	0.3818	19.0	0.80%	284.0	0.63%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.677e+00	0.3818	58.0	2.43%	961.3	2.15%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.650e+00	0.3896	1.0	0.04%	4.1	0.01%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.582e+00	0.4148	140.0	5.87%	2446.6	5.47%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.571e+00	0.4175	142.0	5.95%	2484.4	5.55%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.523e+00	0.4362	69.0	2.89%	1172.9	2.62%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.511e+00	0.4395	28.0	1.17%	447.6	1.00%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.509e+00	0.4395	78.0	3.27%	1335.8	2.99%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.500e+00	0.4401	80.0	3.35%	1372.7	3.07%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.486e+00	0.4442	126.0	5.28%	2206.3	4.93%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.454e+00	0.4568	198.0	8.30%	3526.5	7.88%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.434e+00	0.4637	501.0	21.01%	9125.4	20.40%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.429e+00	0.4639	318.0	13.33%	5739.3	12.83%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.424e+00	0.4639	248.0	10.40%	4450.9	9.95%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-1.421e+00	0.4639	469.0	19.66%	8535.1	19.08%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.411e+00	0.4658	146.0	6.12%	2582.9	5.77%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.411e+00	0.4658	54.0	2.26%	915.8	2.05%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.355e+00	0.4887	5.0	0.21%	64.5	0.14%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.270e+00	0.5293	71.0	2.98%	1237.9	2.77%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.258e+00	0.5336	127.0	5.32%	2260.7	5.05%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.247e+00	0.5370	235.0	9.85%	4249.3	9.50%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.234e+00	0.5418	27.0	1.13%	449.2	1.00%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.218e+00	0.5479	106.0	4.44%	1882.7	4.21%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.178e+00	0.5679	11.0	0.46%	171.7	0.38%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.164e+00	0.5734	73.0	3.06%	1287.3	2.88%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.152e+00	0.5779	3.0	0.13%	37.3	0.08%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.141e+00	0.5817	35.0	1.47%	600.4	1.34%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.135e+00	0.5827	50.0	2.10%	872.1	1.95%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.115e+00	0.5921	8.0	0.34%	122.2	0.27%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-1.089e+00	0.6052	12.0	0.50%	193.1	0.43%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.085e+00	0.6052	16.0	0.67%	264.5	0.59%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.067e+00	0.6136	94.0	3.94%	1686.7	3.77%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.058e+00	0.6162	74.0	3.10%	1320.8	2.95%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.049e+00	0.6194	36.0	1.51%	627.6	1.40%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-9.705e-01	0.6674	10.0	0.42%	164.4	0.37%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-9.666e-01	0.6674	18.0	0.75%	308.8	0.69%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-9.647e-01	0.6674	104.0	4.36%	1888.0	4.22%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-9.509e-01	0.6723	218.0	9.14%	4006.1	8.96%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.471e-01	0.6723	3.0	0.13%	42.6	0.10%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-9.397e-01	0.6744	133.0	5.58%	2430.2	5.43%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-9.189e-01	0.6858	24.0	1.01%	421.8	0.94%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-9.110e-01	0.6885	42.0	1.76%	752.5	1.68%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-9.108e-01	0.6885	5.0	0.21%	78.3	0.18%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-8.875e-01	0.6992	729.0	30.57%	13570.1	30.34%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-8.804e-01	0.7014	9.0	0.38%	151.9	0.34%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-8.634e-01	0.7106	155.0	6.50%	2856.6	6.39%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.373e-01	0.7237	20.0	0.84%	355.6	0.80%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.373e-01	0.7237	20.0	0.84%	355.6	0.80%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-8.160e-01	0.7364	10.0	0.42%	173.3	0.39%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-8.077e-01	0.7397	172.0	7.21%	3187.7	7.13%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-7.921e-01	0.7484	87.0	3.65%	1605.5	3.59%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-7.892e-01	0.7484	13.0	0.55%	230.0	0.51%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-7.794e-01	0.7521	124.0	5.20%	2298.7	5.14%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.768e-01	0.7521	19.0	0.80%	342.6	0.77%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-7.648e-01	0.7575	332.0	13.92%	6192.3	13.84%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.366e-01	0.7761	45.0	1.89%	831.6	1.86%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-7.360e-01	0.7761	33.0	1.38%	607.0	1.36%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-7.315e-01	0.7761	241.0	10.10%	4500.9	10.06%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-6.990e-01	0.7968	17.0	0.71%	312.7	0.70%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.948e-01	0.7972	307.0	12.87%	5750.9	12.86%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-6.878e-01	0.7998	30.0	1.26%	557.8	1.25%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.712e-01	0.8102	64.0	2.68%	1198.7	2.68%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-6.631e-01	0.8137	655.0	27.46%	12292.8	27.48%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-6.626e-01	0.8137	26.0	1.09%	485.9	1.09%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-6.524e-01	0.8165	21.0	0.88%	392.4	0.88%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-6.461e-01	0.8187	3.0	0.13%	52.7	0.12%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-6.441e-01	0.8187	87.0	3.65%	1637.0	3.66%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-6.114e-01	0.8414	62.0	2.60%	1172.1	2.62%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-5.934e-01	0.8536	276.0	11.57%	5208.4	11.64%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-5.700e-01	0.8707	181.0	7.59%	3428.5	7.66%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-5.413e-01	0.8928	157.0	6.58%	2985.7	6.67%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.371e-01	0.8933	13.0	0.55%	252.1	0.56%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-5.223e-01	0.9034	65.0	2.73%	1248.5	2.79%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-5.206e-01	0.9034	53.0	2.22%	1020.5	2.28%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-5.178e-01	0.9034	170.0	7.13%	3239.4	7.24%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-5.143e-01	0.9034	70.0	2.94%	1345.3	3.01%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.104e-01	0.9034	6.0	0.25%	118.1	0.26%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-5.027e-01	0.9052	8.0	0.34%	158.6	0.35%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-4.967e-01	0.9075	168.0	7.04%	3209.3	7.17%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.943e-01	0.9075	10.0	0.42%	198.4	0.44%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.928e-01	0.9075	395.0	16.56%	7497.9	16.76%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-4.829e-01	0.9106	34.0	1.43%	664.2	1.48%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-4.818e-01	0.9106	13.0	0.55%	258.7	0.58%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.713e-01	0.9149	87.0	3.65%	1680.9	3.76%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-4.672e-01	0.9156	300.0	12.58%	5718.5	12.78%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-4.577e-01	0.9211	589.0	24.70%	11173.1	24.98%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-4.538e-01	0.9216	134.0	5.62%	2580.4	5.77%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.416e-01	0.9297	12.0	0.50%	243.5	0.54%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-4.279e-01	0.9394	147.0	6.16%	2837.3	6.34%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.230e-01	0.9409	2.0	0.08%	42.1	0.09%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-4.183e-01	0.9421	64.0	2.68%	1255.4	2.81%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-4.165e-01	0.9421	161.0	6.75%	3108.4	6.95%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-4.120e-01	0.9421	221.0	9.27%	4250.9	9.50%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-3.896e-01	0.9599	363.0	15.22%	6953.0	15.54%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-3.811e-01	0.9650	109.0	4.57%	2130.4	4.76%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-3.806e-01	0.9650	47.0	1.97%	937.8	2.10%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-3.668e-01	0.9724	96.0	4.03%	1886.6	4.22%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.571e-01	0.9787	139.0	5.83%	2714.2	6.07%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.338e-01	0.9985	94.0	3.94%	1860.2	4.16%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-3.299e-01	0.9991	121.0	5.07%	2381.2	5.32%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.266e-01	0.9992	414.0	17.36%	7962.2	17.80%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-3.258e-01	0.9992	1.0	0.04%	24.1	0.05%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.130e-01	1.0000	38.0	1.59%	779.8	1.74%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-3.088e-01	1.0000	24.0	1.01%	503.5	1.13%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-2.947e-01	1.0000	103.0	4.32%	2050.9	4.58%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.936e-01	1.0000	19.0	0.80%	406.5	0.91%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-2.865e-01	1.0000	23.0	0.96%	488.7	1.09%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.865e-01	1.0000	205.0	8.60%	4014.3	8.97%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.822e-01	1.0000	165.0	6.92%	3250.3	7.27%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.749e-01	1.0000	329.0	13.79%	6388.2	14.28%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.720e-01	1.0000	170.0	7.13%	3352.3	7.49%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.713e-01	1.0000	178.0	7.46%	3507.0	7.84%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.697e-01	1.0000	139.0	5.83%	2757.9	6.17%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.674e-01	1.0000	68.0	2.85%	1382.9	3.09%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.570e-01	1.0000	85.0	3.56%	1718.6	3.84%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.477e-01	1.0000	10.0	0.42%	230.7	0.52%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.404e-01	1.0000	14.0	0.59%	315.5	0.71%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-2.394e-01	1.0000	1.0	0.04%	29.9	0.07%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-2.386e-01	1.0000	182.0	7.63%	3604.4	8.06%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.359e-01	1.0000	17.0	0.71%	378.6	0.85%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.240e-01	1.0000	45.0	1.89%	946.2	2.12%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.135e-01	1.0000	12.0	0.50%	279.6	0.63%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.112e-01	1.0000	389.0	16.31%	7588.4	16.96%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.105e-01	1.0000	68.0	2.85%	1407.6	3.15%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-2.105e-01	1.0000	204.0	8.55%	4048.4	9.05%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.033e-01	1.0000	5.0	0.21%	129.9	0.29%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.010e-01	1.0000	7.0	0.29%	174.3	0.39%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.939e-01	1.0000	41.0	1.72%	878.3	1.96%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.805e-01	1.0000	37.0	1.55%	803.7	1.80%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.717e-01	1.0000	213.0	8.93%	4255.0	9.51%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.640e-01	1.0000	74.0	3.10%	1551.4	3.47%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.548e-01	1.0000	79.0	3.31%	1656.4	3.70%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.522e-01	1.0000	121.0	5.07%	2485.5	5.56%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.464e-01	1.0000	61.0	2.56%	1303.6	2.91%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.449e-01	1.0000	7.0	0.29%	186.7	0.42%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.405e-01	1.0000	289.0	12.12%	5754.1	12.86%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.395e-01	1.0000	202.0	8.47%	4075.3	9.11%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.342e-01	1.0000	301.0	12.62%	5993.1	13.40%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.336e-01	1.0000	14.0	0.59%	344.5	0.77%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.333e-01	1.0000	7.0	0.29%	189.2	0.42%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.312e-01	1.0000	2.0	0.08%	69.0	0.15%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-1.311e-01	1.0000	5.0	0.21%	143.3	0.32%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.271e-01	1.0000	17.0	0.71%	411.3	0.92%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.207e-01	1.0000	38.0	1.59%	853.6	1.91%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.201e-01	1.0000	117.0	4.91%	2435.8	5.45%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.184e-01	1.0000	30.0	1.26%	689.8	1.54%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-1.173e-01	1.0000	268.0	11.24%	5380.5	12.03%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.160e-01	1.0000	117.0	4.91%	2439.9	5.45%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.099e-01	1.0000	15.0	0.63%	375.0	0.84%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-1.047e-01	1.0000	181.0	7.59%	3708.8	8.29%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.023e-01	1.0000	40.0	1.68%	906.8	2.03%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.022e-01	1.0000	158.0	6.62%	3261.8	7.29%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.017e-01	1.0000	20.0	0.84%	487.1	1.09%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.002e-01	1.0000	17.0	0.71%	423.9	0.95%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.831e-02	1.0000	213.0	8.93%	4341.9	9.71%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-9.111e-02	1.0000	176.0	7.38%	3629.4	8.11%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-8.545e-02	1.0000	72.0	3.02%	1573.7	3.52%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-8.208e-02	1.0000	7.0	0.29%	206.6	0.46%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-7.646e-02	1.0000	131.0	5.49%	2764.7	6.18%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.288e-02	1.0000	24.0	1.01%	591.5	1.32%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-7.161e-02	1.0000	326.0	13.67%	6583.9	14.72%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-7.104e-02	1.0000	63.0	2.64%	1406.6	3.14%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-7.102e-02	1.0000	78.0	3.27%	1711.5	3.83%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.503e-02	1.0000	21.0	0.88%	532.1	1.19%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-6.255e-02	1.0000	3.0	0.13%	113.6	0.25%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-6.100e-02	1.0000	491.0	20.59%	9789.0	21.88%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-5.875e-02	1.0000	156.0	6.54%	3290.3	7.36%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-5.803e-02	1.0000	186.0	7.80%	3884.3	8.68%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.175e-02	1.0000	147.0	6.16%	3126.0	6.99%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.011e-02	1.0000	14.0	0.59%	388.3	0.87%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.895e-02	1.0000	14.0	0.59%	389.8	0.87%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-4.755e-02	1.0000	12.0	0.50%	344.7	0.77%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-4.641e-02	1.0000	4.0	0.17%	148.8	0.33%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-4.499e-02	1.0000	130.0	5.45%	2802.4	6.27%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-4.482e-02	1.0000	42.0	1.76%	1004.8	2.25%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-4.108e-02	1.0000	70.0	2.94%	1594.6	3.56%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-4.021e-02	1.0000	169.0	7.09%	3592.3	8.03%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-3.382e-02	1.0000	13.0	0.55%	381.7	0.85%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-3.327e-02	1.0000	195.0	8.18%	4130.5	9.23%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.815e-02	1.0000	258.0	10.82%	5394.3	12.06%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.696e-02	1.0000	9.0	0.38%	293.4	0.66%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.675e-02	1.0000	28.0	1.17%	732.7	1.64%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.665e-02	1.0000	6.0	0.25%	217.7	0.49%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.430e-02	1.0000	168.0	7.04%	3628.6	8.11%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.252e-02	1.0000	122.0	5.12%	2709.2	6.06%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-2.193e-02	1.0000	38.0	1.59%	962.6	2.15%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.869e-02	1.0000	45.0	1.89%	1123.1	2.51%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.774e-02	1.0000	19.0	0.80%	548.7	1.23%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.769e-02	1.0000	3.0	0.13%	144.4	0.32%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.646e-02	1.0000	8.0	0.34%	284.5	0.64%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.628e-02	1.0000	9.0	0.38%	310.1	0.69%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.380e-02	1.0000	36.0	1.51%	944.8	2.11%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-9.672e-03	1.0000	1.0	0.04%	87.2	0.19%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-9.523e-03	1.0000	202.0	8.47%	4408.1	9.85%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-9.509e-03	1.0000	6.0	0.25%	247.9	0.55%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-5.143e-03	1.0000	31.0	1.30%	881.3	1.97%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-3.165e-03	1.0000	239.0	10.02%	5263.6	11.77%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.009e-03	1.0000	43.0	1.80%	1180.9	2.64%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-2.950e-03	1.0000	45.0	1.89%	1226.3	2.74%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.147e-03	1.0000	50.0	2.10%	1387.2	3.10%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-9.680e-04	1.0000	110.0	4.61%	2706.7	6.05%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.260e-04	1.0000	11.0	0.46%	461.1	1.03%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.370e-04	1.0000	72.0	3.02%	1919.5	4.29%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-4.430e-04	1.0000	127.0	5.32%	3120.8	6.98%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-4.410e-04	1.0000	214.0	8.97%	4933.7	11.03%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.710e-04	1.0000	63.0	2.64%	1738.7	3.89%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.210e-04	1.0000	73.0	3.06%	2021.2	4.52%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.180e-04	1.0000	30.0	1.26%	1015.3	2.27%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-5.800e-05	1.0000	4.0	0.17%	310.6	0.69%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.500e-05	1.0000	29.0	1.22%	1026.1	2.29%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.300e-05	1.0000	31.0	1.30%	1120.8	2.51%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.100e-05	1.0000	17.0	0.71%	753.3	1.68%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	248.0	10.40%	7303.0	16.33%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	14.9	0.03%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	165.0	6.92%	5384.6	12.04%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	23.1	0.05%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	30.8	0.07%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	242.0	10.15%	8464.8	18.92%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	134.0	5.62%	4891.2	10.93%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	8.9	0.02%