Motif Name Consensus P-value Log P-value q-value (Benjamini) # of Target Sequences with Motif(of 3279) % of Target Sequences with Motif # of Background Sequences with Motif(of 45809) % of Background Sequences with Motif Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer NNATGASTCATH 1e-159 -3.667e+02 0.0000 561.0 17.11% 2066.0 4.51% Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer DATGASTCATHN 1e-153 -3.538e+02 0.0000 617.0 18.82% 2542.3 5.55% Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer GGATGACTCATC 1e-147 -3.402e+02 0.0000 498.0 15.19% 1753.2 3.83% BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer DATGASTCAT 1e-144 -3.326e+02 0.0000 596.0 18.18% 2501.8 5.47% AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer VTGACTCATC 1e-138 -3.195e+02 0.0000 639.0 19.49% 2917.0 6.37% JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer RATGASTCAT 1e-134 -3.106e+02 0.0000 524.0 15.98% 2082.2 4.55% CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer ATTGCGCAAC 1e-120 -2.770e+02 0.0000 617.0 18.82% 3020.0 6.60% Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer NATGASTCABNN 1e-109 -2.518e+02 0.0000 347.0 10.58% 1139.4 2.49% Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer NAACAGCTGG 1e-104 -2.412e+02 0.0000 687.0 20.95% 3917.9 8.56% NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer VTTACGTAAYNNNNN 1e-96 -2.220e+02 0.0000 498.0 15.19% 2420.1 5.29% BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer NAMCAGCTGK 1e-95 -2.209e+02 0.0000 869.0 26.50% 5895.7 12.88% Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer GATGASTCATCN 1e-86 -1.993e+02 0.0000 258.0 7.87% 792.1 1.73% Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer MCAGCTGBYH 1e-85 -1.970e+02 0.0000 981.0 29.92% 7381.4 16.13% HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer RTTATGYAAB 1e-82 -1.901e+02 0.0000 587.0 17.90% 3461.2 7.56% TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer SMCATCTGKH 1e-80 -1.864e+02 0.0000 877.0 26.75% 6401.6 13.99% Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer VNRVCAGCTGGY 1e-75 -1.728e+02 0.0000 678.0 20.68% 4516.8 9.87% NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer ACCATCTGTT 1e-74 -1.723e+02 0.0000 882.0 26.90% 6647.6 14.52% Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer NAHCAGCTGD 1e-69 -1.599e+02 0.0000 729.0 22.23% 5192.0 11.34% Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer RCCATMTGTT 1e-63 -1.472e+02 0.0000 1012.0 30.86% 8488.1 18.55% CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer DRTGTTGCAA 1e-62 -1.439e+02 0.0000 538.0 16.41% 3467.1 7.58% ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer AACATCTGGA 1e-59 -1.381e+02 0.0000 382.0 11.65% 2087.3 4.56% Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer BAACAGCTGT 1e-54 -1.262e+02 0.0000 446.0 13.60% 2781.9 6.08% Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer VCAGCTGYTG 1e-54 -1.249e+02 0.0000 553.0 16.86% 3839.4 8.39% MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer RRCAGCTGYTSY 1e-51 -1.185e+02 0.0000 456.0 13.91% 2960.2 6.47% Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer NNVVCAGCTGBN 1e-48 -1.123e+02 0.0000 752.0 22.93% 6141.0 13.42% MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer AACAGCTG 1e-47 -1.103e+02 0.0000 571.0 17.41% 4220.8 9.22% Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer NGRTGACGTCAY 1e-46 -1.081e+02 0.0000 280.0 8.54% 1463.6 3.20% Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer MTGATGCAAT 1e-45 -1.053e+02 0.0000 243.0 7.41% 1180.3 2.58% SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer AVCAGCTG 1e-43 -1.008e+02 0.0000 1810.0 55.20% 19702.4 43.05% NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer GCCATCTGTT 1e-40 -9.440e+01 0.0000 463.0 14.12% 3329.1 7.27% Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer YTAATTRAWWCCAGATGT 1e-38 -8.966e+01 0.0000 190.0 5.79% 871.6 1.90% Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer GATGACGTCA 1e-37 -8.663e+01 0.0000 344.0 10.49% 2250.1 4.92% Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer ACAGCTGTTN 1e-37 -8.568e+01 0.0000 1099.0 33.52% 10802.9 23.60% Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer ATTGCATCAT 1e-35 -8.137e+01 0.0000 187.0 5.70% 905.0 1.98% Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer TGCTGAGTCA 1e-35 -8.101e+01 0.0000 165.0 5.03% 736.7 1.61% Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer NRRTGACGTCAT 1e-31 -7.292e+01 0.0000 189.0 5.76% 986.4 2.16% c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer ATGACGTCATCY 1e-30 -6.997e+01 0.0000 183.0 5.58% 960.5 2.10% NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer YTGCCAAG 1e-29 -6.700e+01 0.0000 822.0 25.07% 7884.7 17.23% HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer VCAGCTGBNN 1e-27 -6.261e+01 0.0000 779.0 23.76% 7478.8 16.34% Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer SSRGCAGCTGCH 1e-22 -5.286e+01 0.0000 470.0 14.33% 4103.5 8.97% E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer DNRCAGCTGY 1e-20 -4.820e+01 0.0000 585.0 17.84% 5538.3 12.10% Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer CTGTTTAC 1e-19 -4.416e+01 0.0000 830.0 25.31% 8636.2 18.87% Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer TWGTCTGV 1e-17 -4.082e+01 0.0000 1048.0 31.96% 11528.5 25.19% PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer AAGAACATWHTGTTC 1e-16 -3.698e+01 0.0000 146.0 4.45% 953.7 2.08% Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer HTGCTGAGTCAT 1e-15 -3.642e+01 0.0000 48.0 1.46% 154.2 0.34% FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer TGTTTAYTTAGC 1e-15 -3.583e+01 0.0000 425.0 12.96% 3983.7 8.70% GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer AGATAASR 1e-15 -3.570e+01 0.0000 628.0 19.15% 6414.4 14.01% NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer AWWWTGCTGAGTCAT 1e-15 -3.505e+01 0.0000 51.0 1.56% 179.8 0.39% EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer NABTCCCWDGGGAVH 1e-15 -3.495e+01 0.0000 387.0 11.80% 3566.1 7.79% FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer NVWTGTTTAC 1e-14 -3.451e+01 0.0000 486.0 14.82% 4736.7 10.35% Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer AWWNTGCTGAGTCAT 1e-14 -3.372e+01 0.0000 52.0 1.59% 192.4 0.42% NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer ATTTTCCATT 1e-14 -3.271e+01 0.0000 489.0 14.91% 4824.3 10.54% GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer VAGRACAKWCTGTYC 1e-14 -3.259e+01 0.0000 129.0 3.93% 845.8 1.85% NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer GATGACTCAGCA 1e-13 -3.218e+01 0.0000 51.0 1.56% 194.0 0.42% Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer DGTAAACA 1e-13 -3.217e+01 0.0000 357.0 10.89% 3290.6 7.19% TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer AGATAAGANN 1e-13 -3.161e+01 0.0000 814.0 24.82% 8886.5 19.42% RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer NWAACCACADNN 1e-13 -3.123e+01 0.0000 341.0 10.40% 3130.1 6.84% ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer RGRACASNSTGTYCYB 1e-13 -2.997e+01 0.0000 119.0 3.63% 782.9 1.71% RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer SAAACCACAG 1e-12 -2.924e+01 0.0000 293.0 8.94% 2632.8 5.75% RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer AAYTAGGTCA 1e-12 -2.884e+01 0.0000 79.0 2.41% 433.2 0.95% RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer AAYTAGGTCA 1e-12 -2.884e+01 0.0000 79.0 2.41% 433.2 0.95% Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer TAATCCCN 1e-12 -2.832e+01 0.0000 1606.0 48.98% 19577.1 42.77% NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer WNTGTTTRYTTTGGCA 1e-11 -2.633e+01 0.0000 52.0 1.59% 234.1 0.51% GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer NRGVACABNVTGTYCY 1e-11 -2.618e+01 0.0000 72.0 2.20% 397.4 0.87% Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer NBWGATAAGR 1e-11 -2.610e+01 0.0000 421.0 12.84% 4212.6 9.20% RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer GCTGTGGTTW 1e-11 -2.601e+01 0.0000 296.0 9.03% 2745.8 6.00% RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer AAACCACARM 1e-10 -2.472e+01 0.0000 415.0 12.66% 4184.2 9.14% FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer NYYTGTTTACHN 1e-10 -2.427e+01 0.0000 207.0 6.31% 1784.0 3.90% JunD(bZIP)/K562-JunD-ChIP-Seq/Homer ATGACGTCATCN 1e-10 -2.402e+01 0.0000 51.0 1.56% 242.2 0.53% GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer RGGATTAR 1e-9 -2.243e+01 0.0000 453.0 13.82% 4724.7 10.32% Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer YCTTATCTBN 1e-9 -2.217e+01 0.0000 380.0 11.59% 3846.3 8.40% KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer DGGGYGKGGC 1e-9 -2.215e+01 0.0000 325.0 9.91% 3190.7 6.97% FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer SCHTGTTTACAT 1e-9 -2.178e+01 0.0000 298.0 9.09% 2883.9 6.30% NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer SARTGGAAAAWRTGAGTCAB 1e-9 -2.101e+01 0.0000 110.0 3.35% 815.1 1.78% PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer VAGRACAKNCTGTBC 1e-9 -2.078e+01 0.0000 789.0 24.06% 9047.3 19.77% FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer WWTRTAAACAVG 1e-8 -2.065e+01 0.0000 363.0 11.07% 3692.9 8.07% STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer NATTTCCNGGAAAT 1e-8 -2.010e+01 0.0000 160.0 4.88% 1358.0 2.97% EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer NWGGGTGTGGCY 1e-8 -2.009e+01 0.0000 75.0 2.29% 486.2 1.06% Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer NNNCTTTCCAGGAAA 1e-8 -2.005e+01 0.0000 593.0 18.08% 6567.6 14.35% Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer CTGTCTGG 1e-8 -1.993e+01 0.0000 522.0 15.92% 5677.7 12.41% FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer WAAGTAAACA 1e-8 -1.975e+01 0.0000 417.0 12.72% 4381.9 9.57% TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer TRCATTCCAG 1e-8 -1.946e+01 0.0000 485.0 14.79% 5234.9 11.44% Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer SVYTTCCNGGAARB 1e-8 -1.934e+01 0.0000 302.0 9.21% 3004.1 6.56% Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer CTTCCGGGAA 1e-8 -1.931e+01 0.0000 219.0 6.68% 2035.9 4.45% Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer WWATRTAAACAN 1e-8 -1.899e+01 0.0000 374.0 11.41% 3883.1 8.48% RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer AAWCTAGGTCARDNN 1e-8 -1.852e+01 0.0000 73.0 2.23% 486.5 1.06% Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer GCCACACCCA 1e-7 -1.824e+01 0.0000 102.0 3.11% 777.6 1.70% FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer WAAGTAAACA 1e-7 -1.801e+01 0.0000 503.0 15.34% 5521.4 12.06% CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer GCTAATCC 1e-7 -1.727e+01 0.0000 850.0 25.92% 10033.3 21.92% Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer NNNVCTGWGYAAACASN 1e-7 -1.710e+01 0.0000 387.0 11.80% 4114.1 8.99% Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer NNTGTGGATTSS 1e-7 -1.684e+01 0.0000 270.0 8.23% 2703.2 5.91% RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer WAABTAGGTCAV 1e-7 -1.684e+01 0.0000 54.0 1.65% 329.5 0.72% MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer GCTGASTCAGCA 1e-7 -1.649e+01 0.0000 96.0 2.93% 744.7 1.63% TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer YCWGGAATGY 1e-7 -1.647e+01 0.0000 307.0 9.36% 3160.2 6.90% KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer MKGGGYGTGGCC 1e-7 -1.644e+01 0.0000 259.0 7.90% 2585.7 5.65% Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer CYTGTTTACWYW 1e-7 -1.644e+01 0.0000 334.0 10.19% 3489.1 7.62% Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer SAGATAAGRV 1e-7 -1.632e+01 0.0000 234.0 7.14% 2293.8 5.01% MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer TGCTGACTCA 1e-6 -1.598e+01 0.0000 303.0 9.24% 3129.1 6.84% Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer NYTAATCCYB 1e-6 -1.573e+01 0.0000 296.0 9.03% 3053.5 6.67% ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer AGGCCTAG 1e-6 -1.556e+01 0.0000 532.0 16.22% 6003.4 13.12% Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer CYHATAAAAN 1e-6 -1.488e+01 0.0000 1033.0 31.50% 12615.4 27.56% Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer BBCTTATCTS 1e-6 -1.455e+01 0.0000 255.0 7.78% 2600.9 5.68% STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer RTTTCTNAGAAA 1e-5 -1.361e+01 0.0000 168.0 5.12% 1602.1 3.50% FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer TRTTTACTTW 1e-5 -1.342e+01 0.0000 407.0 12.41% 4522.5 9.88% KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer NRGCCCCRCCCHBNN 1e-5 -1.336e+01 0.0000 106.0 3.23% 909.2 1.99% CRE(bZIP)/Promoter/Homer CSGTGACGTCAC 1e-5 -1.332e+01 0.0000 71.0 2.17% 539.2 1.18% Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer VCAKCTGGNNNCCAGMTGBN 1e-5 -1.293e+01 0.0000 62.0 1.89% 454.7 0.99% TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer CCWGGAATGY 1e-5 -1.261e+01 0.0000 334.0 10.19% 3644.6 7.96% NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer NVCACGTG 1e-5 -1.259e+01 0.0000 499.0 15.22% 5735.3 12.53% TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer CYRCATTCCA 1e-5 -1.255e+01 0.0000 409.0 12.47% 4589.9 10.03% STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer NYTTCCWGGAAR 1e-5 -1.250e+01 0.0000 414.0 12.63% 4655.5 10.17% Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer TGCGTGGGYG 1e-5 -1.246e+01 0.0000 160.0 4.88% 1542.4 3.37% Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer HTTTCCCASG 1e-5 -1.239e+01 0.0000 557.0 16.99% 6494.2 14.19% EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer GTCCCCWGGGGA 1e-5 -1.188e+01 0.0000 353.0 10.77% 3915.9 8.56% Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer TYTGACCASWRG 1e-5 -1.154e+01 0.0000 261.0 7.96% 2786.5 6.09% MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer DGCACACGTG 1e-4 -1.146e+01 0.0000 312.0 9.52% 3421.6 7.48% AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer CCAGGAACAG 1e-4 -1.137e+01 0.0000 1225.0 37.36% 15479.1 33.82% TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer CCWGGAATGY 1e-4 -1.134e+01 0.0000 212.0 6.47% 2196.4 4.80% Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer RGKGGGCGGAGC 1e-4 -1.128e+01 0.0000 218.0 6.65% 2271.5 4.96% BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer GNCACGTG 1e-4 -1.111e+01 0.0001 552.0 16.83% 6506.4 14.22% HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer TTTTATKRGG 1e-4 -1.025e+01 0.0001 417.0 12.72% 4813.1 10.52% LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer RGGTTACTANAGGTCA 1e-4 -1.018e+01 0.0001 25.0 0.76% 138.6 0.30% bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer NAGTTTCABTHTGACTNW 1e-4 -9.917e+00 0.0002 186.0 5.67% 1934.7 4.23% THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer GGTCANYTGAGGWCA 1e-4 -9.566e+00 0.0002 129.0 3.93% 1266.8 2.77% MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer RTCATGTGAC 1e-4 -9.564e+00 0.0002 274.0 8.36% 3034.7 6.63% Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer CTGGCAGSCTGCCA 1e-4 -9.509e+00 0.0003 151.0 4.61% 1528.3 3.34% Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer CVGTSCTCCC 1e-3 -9.082e+00 0.0004 553.0 16.86% 6653.1 14.54% Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer YCATYAATCA 1e-3 -8.862e+00 0.0005 373.0 11.38% 4328.5 9.46% Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer RCCACGTGGYYN 1e-3 -8.841e+00 0.0005 188.0 5.73% 2000.7 4.37% Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer TGTTKCCTAGCAACM 1e-3 -8.822e+00 0.0005 338.0 10.31% 3882.9 8.48% Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer TTTTATGGCM 1e-3 -8.579e+00 0.0006 913.0 27.84% 11491.9 25.11% Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer GGGGCTYGKCTGGGA 1e-3 -8.401e+00 0.0007 66.0 2.01% 577.4 1.26% Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer BSNTGTTTACWYWGN 1e-3 -8.282e+00 0.0008 132.0 4.03% 1343.8 2.94% Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer VBSYGTCTGG 1e-3 -8.272e+00 0.0008 476.0 14.52% 5701.1 12.46% ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer GGAACAGCCG 1e-3 -8.098e+00 0.0010 222.0 6.77% 2453.2 5.36% Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer GKTAATGR 1e-3 -8.065e+00 0.0010 996.0 30.38% 12662.5 27.67% PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer TGGTACATTCCA 1e-3 -8.041e+00 0.0010 203.0 6.19% 2219.1 4.85% KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer RGKGGGCGKGGC 1e-3 -8.039e+00 0.0010 371.0 11.31% 4352.4 9.51% ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer WDNCTGGGCA 1e-3 -8.032e+00 0.0010 449.0 13.69% 5365.8 11.72% Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer NCYAATAAAA 1e-3 -8.031e+00 0.0010 642.0 19.58% 7908.8 17.28% Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer GWAAYHTGAKMC 1e-3 -8.028e+00 0.0010 350.0 10.67% 4082.1 8.92% NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer CYTGGCABNSTGCCAR 1e-3 -7.825e+00 0.0012 127.0 3.87% 1299.1 2.84% Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer KGTTGCCATGGCAA 1e-3 -7.708e+00 0.0013 75.0 2.29% 694.9 1.52% Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer VGCCATAAAA 1e-3 -7.572e+00 0.0015 926.0 28.24% 11761.8 25.70% Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer HDGYAATGAAAN 1e-3 -7.331e+00 0.0019 703.0 21.44% 8781.8 19.19% IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer CTTTCANTATGACTV 1e-3 -7.250e+00 0.0021 57.0 1.74% 503.5 1.10% WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer MCTCCCMCRCAB 1e-3 -7.118e+00 0.0024 155.0 4.73% 1666.3 3.64% STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer TTCCKNAGAA 1e-3 -7.020e+00 0.0026 246.0 7.50% 2810.6 6.14% Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer GTCATGCHTGRCTGS 1e-2 -6.702e+00 0.0035 99.0 3.02% 1003.3 2.19% Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer RGCCATTAAC 1e-2 -6.631e+00 0.0038 1466.0 44.71% 19266.6 42.10% Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer NGCGTGGGCGGR 1e-2 -6.557e+00 0.0040 37.0 1.13% 300.4 0.66% Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer GGGGGGGG 1e-2 -6.491e+00 0.0043 283.0 8.63% 3314.2 7.24% AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer ATGCCCTGAGGC 1e-2 -6.377e+00 0.0048 220.0 6.71% 2515.7 5.50% RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer CGGTTGCCATGGCAAC 1e-2 -6.220e+00 0.0055 28.0 0.85% 212.1 0.46% Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer TGACANARRCCAGRC 1e-2 -5.985e+00 0.0069 170.0 5.18% 1904.6 4.16% THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer GGTCACCTGAGGTCA 1e-2 -5.900e+00 0.0075 148.0 4.51% 1633.3 3.57% ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer AGGCCTRG 1e-2 -5.852e+00 0.0078 380.0 11.59% 4620.5 10.10% HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer TTCTAGAABNTTCTA 1e-2 -5.780e+00 0.0084 88.0 2.68% 903.4 1.97% AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer TGGCAGTTGG 1e-2 -5.680e+00 0.0092 527.0 16.07% 6580.9 14.38% STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer ABTTCYYRRGAA 1e-2 -5.672e+00 0.0092 238.0 7.26% 2786.6 6.09% RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer TTGAMCTTTG 1e-2 -5.617e+00 0.0097 889.0 27.11% 11465.2 25.05% GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer CRGCTGBNGNSNNSAGATAA 1e-2 -5.604e+00 0.0097 46.0 1.40% 418.4 0.91% DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer TWGHWACAWTGTWDC 1e-2 -5.505e+00 0.0107 92.0 2.81% 961.6 2.10% MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer WNTGCTGASTCAGCANWTTY 1e-2 -5.374e+00 0.0121 144.0 4.39% 1608.8 3.52% OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer ATGCATWATGCATRW 1e-2 -5.238e+00 0.0138 272.0 8.30% 3254.3 7.11% Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer HAWGRGGCCM 1e-2 -5.198e+00 0.0143 803.0 24.49% 10345.2 22.60% ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer ATTTCCCAGVAKSCY 1e-2 -5.130e+00 0.0152 100.0 3.05% 1073.5 2.35% Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer TGATTRATGGCY 1e-2 -5.092e+00 0.0157 76.0 2.32% 783.8 1.71% X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer GGTTGCCATGGCAA 1e-2 -4.932e+00 0.0183 42.0 1.28% 389.4 0.85% ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer TGGAACAGMA 1e-2 -4.923e+00 0.0183 283.0 8.63% 3420.3 7.47% LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer NGCTAATTAG 1e-2 -4.917e+00 0.0183 503.0 15.34% 6332.8 13.84% Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer TAATTAGN 1e-2 -4.827e+00 0.0199 385.0 11.74% 4770.5 10.42% Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer TGWAAYCTGABACCB 1e-2 -4.810e+00 0.0202 21.0 0.64% 162.3 0.35% Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer GGCCYCCTGCTGDGH 1e-2 -4.746e+00 0.0214 156.0 4.76% 1792.2 3.92% Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer AAGCACTTAA 1e-2 -4.684e+00 0.0226 728.0 22.20% 9388.8 20.51% CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer NTNATGCAAYMNNHTGMAAY 1e-2 -4.630e+00 0.0237 64.0 1.95% 655.4 1.43% Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer GTTGCCATGGCAACM 1e-2 -4.606e+00 0.0242 29.0 0.88% 251.6 0.55% EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer ATTTCCTGTN 1e-1 -4.514e+00 0.0263 272.0 8.30% 3307.2 7.23% EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer DGTCCCYRGGGA 1e-1 -4.462e+00 0.0276 69.0 2.10% 721.1 1.58% PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer ACCRTGACTAATTNN 1e-1 -4.410e+00 0.0289 76.0 2.32% 808.9 1.77% AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer SCCTSAGGSCAW 1e-1 -4.407e+00 0.0289 278.0 8.48% 3394.4 7.42% Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer CCATTGTTNY 1e-1 -4.405e+00 0.0289 579.0 17.66% 7407.0 16.18% Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer YGGCCCCGCCCC 1e-1 -4.291e+00 0.0320 321.0 9.79% 3970.3 8.67% Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer GGCCATAAATCA 1e-1 -4.266e+00 0.0327 180.0 5.49% 2128.7 4.65% ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer GAGCCTGGTACTGWGCCTGR 1e-1 -4.140e+00 0.0369 77.0 2.35% 831.5 1.82% Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer ACTYKNATTCGTGNTACTTC 1e-1 -4.118e+00 0.0375 25.0 0.76% 217.9 0.48% BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer NHAACBGYYV 1e-1 -4.093e+00 0.0382 515.0 15.71% 6579.1 14.37% Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer GYMATAAAAH 1e-1 -4.051e+00 0.0396 244.0 7.44% 2976.7 6.50% Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer GGTGYTGACAGS 1e-1 -4.018e+00 0.0407 77.0 2.35% 836.2 1.83% CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer NGYCATAAAWCH 1e-1 -4.011e+00 0.0408 310.0 9.45% 3849.5 8.41% HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer BSTTCTRGAABVTTCYAGAA 1e-1 -3.897e+00 0.0455 55.0 1.68% 572.5 1.25% NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer WGGGGATTTCCC 1e-1 -3.822e+00 0.0488 169.0 5.15% 2015.1 4.40% PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer GTCACGCTCSCTGM 1e-1 -3.666e+00 0.0567 29.0 0.88% 272.7 0.60% CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer GHCACGTG 1e-1 -3.655e+00 0.0571 129.0 3.93% 1510.9 3.30% ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer GRTGMTRGAGCC 1e-1 -3.532e+00 0.0642 141.0 4.30% 1672.3 3.65% GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer CTCCCTGGGAGGCCN 1e-1 -3.526e+00 0.0642 341.0 10.40% 4307.1 9.41% Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer ATGCATAATTCA 1e-1 -3.452e+00 0.0688 132.0 4.03% 1561.6 3.41% Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer MAATCACTGC 1e-1 -3.441e+00 0.0692 228.0 6.95% 2815.1 6.15% n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer VRCCACGTGG 1e-1 -3.418e+00 0.0705 168.0 5.12% 2030.1 4.44% Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer SSCMATWAAA 1e-1 -3.357e+00 0.0746 237.0 7.23% 2941.9 6.43% Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer RAACAATGGN 1e-1 -3.220e+00 0.0851 366.0 11.16% 4674.5 10.21% c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer VVCCACGTGG 1e-1 -3.118e+00 0.0938 125.0 3.81% 1492.2 3.26% EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer NRBCARRGGTCA 1e-1 -3.117e+00 0.0938 341.0 10.40% 4350.8 9.51% Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer NRAACCRGTTYRAACCRGYT 1e-1 -3.112e+00 0.0938 46.0 1.40% 491.1 1.07% ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer NGNTCTAGAACCNGV 1e-1 -3.019e+00 0.1019 115.0 3.51% 1369.4 2.99% Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer CACAGCAGGGGG 1e-1 -2.953e+00 0.1084 167.0 5.09% 2052.5 4.48% PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer YCCDNTCCAGGTTTT 1e-1 -2.920e+00 0.1115 341.0 10.40% 4372.0 9.55% ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer GAGSCCGAGC 1e-1 -2.793e+00 0.1260 45.0 1.37% 491.3 1.07% Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer ADBTAATTAR 1e-1 -2.793e+00 0.1260 612.0 18.66% 8063.8 17.62% GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer NNNNNBAGATAWYATCTVHN 1e-1 -2.759e+00 0.1291 51.0 1.56% 567.5 1.24% Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer BTCAAGGTCA 1e-1 -2.737e+00 0.1314 191.0 5.82% 2387.7 5.22% Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer GCCACRCCCACY 1e-1 -2.702e+00 0.1354 62.0 1.89% 708.7 1.55% PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer NGTGTTCAVTSAAGCGKAAA 1e-1 -2.696e+00 0.1355 30.0 0.91% 311.7 0.68% RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer GGGRAARRGRMCAGMTG 1e-1 -2.644e+00 0.1422 110.0 3.35% 1329.4 2.90% Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer GKVTCADRTTWC 1e-1 -2.635e+00 0.1428 82.0 2.50% 967.6 2.11% ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer GARTGGTCATCGCCC 1e-1 -2.621e+00 0.1441 18.0 0.55% 171.0 0.37% Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer GGCMATGAAA 1e-1 -2.591e+00 0.1478 422.0 12.87% 5507.1 12.03% Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer GTCACGTGGT 1e-1 -2.558e+00 0.1521 72.0 2.20% 843.6 1.84% Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer ATGMATATDC 1e-1 -2.511e+00 0.1586 325.0 9.91% 4205.6 9.19% Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer RGCAATNAAA 1e-1 -2.497e+00 0.1602 986.0 30.07% 13251.6 28.95% KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer GGGGGTGTGTCC 1e-1 -2.446e+00 0.1677 111.0 3.39% 1356.9 2.96% Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer SCCTAGCAACAG 1e-1 -2.417e+00 0.1719 86.0 2.62% 1032.8 2.26% Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer CCWTTGTYYB 1e-1 -2.416e+00 0.1719 534.0 16.29% 7057.9 15.42% COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer GKBCARAGGTCA 1e-1 -2.359e+00 0.1805 362.0 11.04% 4725.8 10.33% Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer AAACMATTAN 1e-1 -2.357e+00 0.1805 183.0 5.58% 2316.3 5.06% Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer AGGVNCCTTTGT 1e-1 -2.337e+00 0.1830 271.0 8.26% 3498.2 7.64% ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer RCAGGATGTGGT 1e-1 -2.337e+00 0.1830 24.0 0.73% 250.7 0.55% Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer BTCAAGGTCA 1e0 -2.302e+00 0.1878 138.0 4.21% 1723.6 3.77% FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer AGTAAACAAAAAAGAACAND 1e0 -2.299e+00 0.1878 22.0 0.67% 227.0 0.50% Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer NANTGCSGCA 1e0 -2.272e+00 0.1919 54.0 1.65% 629.0 1.37% CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer CCATATATGGNM 1e0 -2.263e+00 0.1928 98.0 2.99% 1199.3 2.62% DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer YDGHTACAWTGTADC 1e0 -2.260e+00 0.1928 64.0 1.95% 757.2 1.65% Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer YCTTTGTTCC 1e0 -2.181e+00 0.2075 275.0 8.39% 3571.6 7.80% PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer RTGATTKATRGN 1e0 -2.124e+00 0.2186 271.0 8.26% 3524.8 7.70% Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer GGYAATGAAA 1e0 -2.001e+00 0.2463 221.0 6.74% 2864.7 6.26% Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer TTRAGTGSYK 1e0 -2.000e+00 0.2463 633.0 19.30% 8486.8 18.54% Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer CTAATKGV 1e0 -1.948e+00 0.2574 641.0 19.55% 8606.7 18.80% IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer ACTGAAACCA 1e0 -1.946e+00 0.2574 146.0 4.45% 1862.5 4.07% MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer GGCVGTTR 1e0 -1.932e+00 0.2594 553.0 16.86% 7400.4 16.17% ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer AGGAARCAGCTG 1e0 -1.843e+00 0.2822 33.0 1.01% 381.3 0.83% TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer GTCACGTGACYV 1e0 -1.718e+00 0.3187 16.0 0.49% 173.0 0.38% Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer YSTGGGTGGTCT 1e0 -1.630e+00 0.3465 62.0 1.89% 771.5 1.69% Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer ANTTMRCASBNNNGTGYKAAN 1e0 -1.623e+00 0.3474 79.0 2.41% 997.4 2.18% HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer TWVGGTCCGC 1e0 -1.542e+00 0.3752 29.0 0.88% 344.3 0.75% E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer BTKGGCGGGAAA 1e0 -1.486e+00 0.3954 99.0 3.02% 1277.2 2.79% Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer ATTAACACCT 1e0 -1.485e+00 0.3954 699.0 21.32% 9508.0 20.77% ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer SMCAGTCWGAKGGAGGAGGC 1e0 -1.466e+00 0.4002 15.0 0.46% 168.4 0.37% NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer GGAAATTCCC 1e0 -1.461e+00 0.4004 19.0 0.58% 219.0 0.48% USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer SGTCACGTGR 1e0 -1.430e+00 0.4113 100.0 3.05% 1296.9 2.83% Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer NTAATBNAATTA 1e0 -1.425e+00 0.4118 220.0 6.71% 2927.8 6.40% COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer AGRGGTCA 1e0 -1.408e+00 0.4170 416.0 12.69% 5619.6 12.28% ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer CTGCCWVCTTTTRTA 1e0 -1.323e+00 0.4522 176.0 5.37% 2341.6 5.12% FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer AGGTCANTGACCTB 1e0 -1.285e+00 0.4680 96.0 2.93% 1257.4 2.75% Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer NRYTTCCGGY 1e0 -1.282e+00 0.4680 118.0 3.60% 1556.6 3.40% Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer CCCCTCCCCCAC 1e0 -1.245e+00 0.4835 33.0 1.01% 413.7 0.90% Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer CCWTTGTY 1e0 -1.220e+00 0.4936 573.0 17.47% 7830.3 17.11% MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer TTCAAAWTAAAAGTC 1e0 -1.196e+00 0.5036 88.0 2.68% 1158.5 2.53% IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer GRAASTGAAAST 1e0 -1.194e+00 0.5036 109.0 3.32% 1444.2 3.16% OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer ATTTGCATAACAATG 1e0 -1.187e+00 0.5044 59.0 1.80% 766.6 1.67% Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer MACAGGAAGT 1e0 -1.143e+00 0.5247 90.0 2.74% 1191.1 2.60% THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer TRAGGTCA 1e0 -1.142e+00 0.5247 1131.0 34.49% 15602.8 34.09% CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer TGCAGTTCCMVNWRTGGCCA 1e0 -1.083e+00 0.5513 4.0 0.12% 41.4 0.09% p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer ACATGCCCGGGCAT 1e0 -1.083e+00 0.5513 4.0 0.12% 41.2 0.09% ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer CCTCATGGTGYCYTWYTCCCTTGTG 1e0 -1.077e+00 0.5521 8.0 0.24% 92.8 0.20% ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer GTGGGCCCCA 1e0 -1.065e+00 0.5566 31.0 0.95% 398.2 0.87% p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer NRRRCAWGTCCDGRCATGYY 1e0 -1.052e+00 0.5620 11.0 0.34% 133.0 0.29% ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer GGGTTTTGAAGGATGARTAGGAGTT 1e0 -1.051e+00 0.5620 1.0 0.03% 6.4 0.01% Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer NTAATTDGCYAATTANNWWD 1e0 -1.047e+00 0.5620 9.0 0.27% 106.1 0.23% ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer RHHCAGAGAGGB 1e0 -1.017e+00 0.5756 8.0 0.24% 94.7 0.21% E-box(bHLH)/Promoter/Homer SSGGTCACGTGA 1e0 -1.008e+00 0.5785 12.0 0.37% 147.8 0.32% ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer TGGGGAAGGGCM 1e0 -9.938e-01 0.5846 204.0 6.22% 2779.3 6.07% NFY(CCAAT)/Promoter/Homer RGCCAATSRG 1e0 -9.598e-01 0.6026 218.0 6.65% 2979.3 6.51% Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer NNAYTTCCTGHN 1e0 -9.511e-01 0.6057 280.0 8.54% 3839.7 8.39% OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer ATGAATWATTCATGA 1e0 -9.480e-01 0.6057 5.0 0.15% 57.4 0.13% RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer AGGTCAAGGTCA 1e0 -9.262e-01 0.6164 26.0 0.79% 340.2 0.74% Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer NDGTAATTAC 1e0 -9.142e-01 0.6216 219.0 6.68% 3002.9 6.56% Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer TAATCHGATTAC 1e0 -8.872e-01 0.6363 6.0 0.18% 73.0 0.16% NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer KCCACGTGAC 1e0 -8.530e-01 0.6561 260.0 7.93% 3584.8 7.83% Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer BCCATTGTTC 1e0 -8.458e-01 0.6584 266.0 8.11% 3669.4 8.02% RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer AGGTCAAGGTCA 1e0 -8.414e-01 0.6590 7.0 0.21% 87.4 0.19% MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer HWWGTCAGCAWWTTT 1e0 -8.412e-01 0.6590 96.0 2.93% 1312.9 2.87% Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer CCATTGTTYB 1e0 -8.147e-01 0.6720 221.0 6.74% 3051.4 6.67% SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer ASWTCCTGBT 1e0 -8.107e-01 0.6723 292.0 8.91% 4039.2 8.83% GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer AGATGKDGAGATAAG 1e0 -8.105e-01 0.6723 20.0 0.61% 266.9 0.58% SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer CAAGGHCANV 1e0 -8.075e-01 0.6723 111.0 3.39% 1525.7 3.33% IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer GAAASYGAAASY 1e0 -7.611e-01 0.6967 29.0 0.88% 394.7 0.86% Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer GTRGGTCASTGGGTCA 1e0 -7.611e-01 0.6967 29.0 0.88% 395.0 0.86% Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer GGTTAAWCATTAA 1e0 -7.449e-01 0.7056 41.0 1.25% 562.4 1.23% p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer NNDRCATGYCYNRRCATGYH 1e0 -7.315e-01 0.7126 81.0 2.47% 1120.4 2.45% Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer AAGGTGTKAA 1e0 -7.238e-01 0.7156 438.0 13.36% 6098.9 13.33% ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer ARGAGGMCAAAATGW 1e0 -7.222e-01 0.7156 46.0 1.40% 634.8 1.39% Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer ATGAATATTC 1e0 -7.043e-01 0.7247 30.0 0.91% 413.7 0.90% Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer CCTGCTGAGH 1e0 -6.749e-01 0.7438 202.0 6.16% 2819.4 6.16% RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer RGGTCADNNAGAGGTCAV 1e0 -6.731e-01 0.7438 7.0 0.21% 94.4 0.21% PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer GCAGCCAAGCRTGACH 1e0 -6.544e-01 0.7541 77.0 2.35% 1076.2 2.35% GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer CGTGGGTGGTCC 1e0 -6.511e-01 0.7541 25.0 0.76% 348.9 0.76% ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer ACAGGAAGTG 1e0 -6.491e-01 0.7541 494.0 15.07% 6906.7 15.09% ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer AGAAATGACTTCCCT 1e0 -6.263e-01 0.7678 2.0 0.06% 25.1 0.05% ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer GNCTGTASTRNTGBCTCHTT 1e0 -6.152e-01 0.7738 8.0 0.24% 111.1 0.24% p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer RRCATGYCYRGRCATGYYYN 1e0 -6.130e-01 0.7738 20.0 0.61% 281.6 0.62% p53(p53)/Saos-p53-ChIP-Seq/Homer RRCATGYCYRGRCATGYYYN 1e0 -6.130e-01 0.7738 20.0 0.61% 281.6 0.62% Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer TGACCTTTNCNT 1e0 -6.074e-01 0.7738 47.0 1.43% 662.6 1.45% E2F(E2F)/Hela-CellCycle-Expression/Homer TTSGCGCGAAAA 1e0 -6.055e-01 0.7738 6.0 0.18% 83.5 0.18% Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer NNYTAATTAR 1e0 -6.006e-01 0.7738 383.0 11.68% 5372.2 11.74% GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer AGATSTNDNNDSAGATAASN 1e0 -5.676e-01 0.7955 20.0 0.61% 285.1 0.62% Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer RTCACSCCAY 1e0 -5.640e-01 0.7957 48.0 1.46% 682.0 1.49% Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer TBGCACGCAA 1e0 -5.582e-01 0.7978 127.0 3.87% 1796.8 3.93% ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer YTKGATAHAGTATTCTWGGTNGGCA 1e0 -5.412e-01 0.8089 22.0 0.67% 316.9 0.69% Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer CGGTCACSCCAC 1e0 -5.298e-01 0.8155 29.0 0.88% 417.6 0.91% PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer GGAAGTGAAAST 1e0 -5.172e-01 0.8231 60.0 1.83% 859.6 1.88% E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer VDTTTCCCGCCA 1e0 -4.998e-01 0.8348 14.0 0.43% 205.7 0.45% ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer RGGGCACTAACY 1e0 -4.959e-01 0.8355 147.0 4.48% 2093.2 4.57% Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer CAAAGGTCAG 1e0 -4.950e-01 0.8355 569.0 17.35% 8021.2 17.53% GFY(?)/Promoter/Homer ACTACAATTCCC 1e0 -4.882e-01 0.8366 14.0 0.43% 206.8 0.45% Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer RSCACTYRAG 1e0 -4.756e-01 0.8445 826.0 25.19% 11631.5 25.41% PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer AGAGGAAGTG 1e0 -4.589e-01 0.8560 139.0 4.24% 1990.5 4.35% Sp1(Zf)/Promoter/Homer GGCCCCGCCCCC 1e0 -4.569e-01 0.8560 18.0 0.55% 267.7 0.58% Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer YTGWCADY 1e0 -4.461e-01 0.8615 1006.0 30.68% 14168.9 30.96% ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer GTCWGCTGTYYCTCT 1e0 -4.301e-01 0.8727 20.0 0.61% 299.5 0.65% PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer ACTTTCACTTTC 1e0 -4.269e-01 0.8727 170.0 5.18% 2438.3 5.33% HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer RTACGTGC 1e0 -4.255e-01 0.8727 218.0 6.65% 3117.6 6.81% ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer AAGGKGRCGCAGGCA 1e0 -4.231e-01 0.8727 24.0 0.73% 358.6 0.78% Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer CCATTGTATGCAAAT 1e0 -4.191e-01 0.8727 38.0 1.16% 561.5 1.23% E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer GGCGGGAARN 1e0 -4.180e-01 0.8727 77.0 2.35% 1120.8 2.45% EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer VACAGGAAAT 1e0 -4.080e-01 0.8757 152.0 4.64% 2189.5 4.78% HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer GYCATCMATCAT 1e0 -3.866e-01 0.8919 26.0 0.79% 392.7 0.86% GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer AAACYKGTTWDACMRGTTTB 1e0 -3.820e-01 0.8933 96.0 2.93% 1400.7 3.06% NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer GGGGGAATCCCC 1e0 -3.746e-01 0.8972 19.0 0.58% 291.4 0.64% Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer RRSCACTYAA 1e0 -3.745e-01 0.8972 638.0 19.46% 9056.0 19.79% ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer ANCAGGAAGT 1e0 -3.686e-01 0.8972 221.0 6.74% 3181.5 6.95% VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer ARAGGTCANWGAGTTCANNN 1e0 -3.684e-01 0.8972 41.0 1.25% 613.0 1.34% PSE(SNAPc)/K562-mStart-Seq/Homer WAVTCACCMTAASYDAAAAG 1e0 -3.604e-01 0.8991 145.0 4.42% 2105.9 4.60% Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer NRYTTCCGGH 1e0 -3.503e-01 0.9055 292.0 8.91% 4194.1 9.16% ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer GGVTCTCGCGAGAAC 1e0 -3.364e-01 0.9154 2.0 0.06% 35.2 0.08% CHR(?)/Hela-CellCycle-Expression/Homer SRGTTTCAAA 1e0 -3.337e-01 0.9154 234.0 7.14% 3380.4 7.39% PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer RGGTCTCTAACY 1e0 -3.272e-01 0.9183 67.0 2.04% 998.9 2.18% Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer TGTCANYT 1e0 -3.232e-01 0.9193 1064.0 32.45% 15068.3 32.92% IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer AGTTTCAKTTTC 1e0 -3.205e-01 0.9193 106.0 3.23% 1561.5 3.41% DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer NWTAAYCYAATCAWN 1e0 -3.121e-01 0.9240 12.0 0.37% 194.6 0.43% HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer CARRGKBCAAAGTYCA 1e0 -2.999e-01 0.9327 115.0 3.51% 1697.8 3.71% ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer VAGGTCACNSTGACC 1e0 -2.838e-01 0.9450 50.0 1.52% 762.5 1.67% Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer HACTTCCGGY 1e0 -2.760e-01 0.9496 106.0 3.23% 1576.8 3.45% IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer GAAAGTGAAAGT 1e0 -2.598e-01 0.9624 40.0 1.22% 621.3 1.36% EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer GGYAGCAYDTGCTDCCCNNN 1e0 -2.484e-01 0.9705 2.0 0.06% 40.9 0.09% ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer ACVAGGAAGT 1e0 -2.255e-01 0.9901 206.0 6.28% 3035.2 6.63% ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer ACAGGAAGTG 1e0 -2.239e-01 0.9901 283.0 8.63% 4136.6 9.04% ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer AGTTTCASTTTC 1e0 -2.042e-01 1.0000 13.0 0.40% 225.9 0.49% OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer ATGAATATTCATGAG 1e0 -1.824e-01 1.0000 1.0 0.03% 25.7 0.06% Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer TAAYCYAATCAA 1e0 -1.800e-01 1.0000 18.0 0.55% 308.8 0.67% EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer AVCAGGAAGT 1e0 -1.788e-01 1.0000 390.0 11.89% 5695.6 12.44% HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer TACGTGCV 1e0 -1.536e-01 1.0000 38.0 1.16% 622.2 1.36% PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer MGGAAGTGAAAC 1e0 -1.516e-01 1.0000 417.0 12.72% 6106.9 13.34% Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer AGGTGHCAGACA 1e0 -1.486e-01 1.0000 39.0 1.19% 639.9 1.40% bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer KCACGTGMCN 1e0 -1.476e-01 1.0000 197.0 6.01% 2957.2 6.46% ETS(ETS)/Promoter/Homer AACCGGAAGT 1e0 -1.457e-01 1.0000 55.0 1.68% 882.0 1.93% c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer VCCACGTG 1e0 -1.267e-01 1.0000 62.0 1.89% 995.2 2.17% HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer TGATKGATGR 1e0 -1.261e-01 1.0000 68.0 2.07% 1085.9 2.37% E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer CWGGCGGGAA 1e0 -1.244e-01 1.0000 22.0 0.67% 386.7 0.84% E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer GGCGGGAAAH 1e0 -1.187e-01 1.0000 54.0 1.65% 880.0 1.92% Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer AGGTGTGAAA 1e0 -1.175e-01 1.0000 286.0 8.72% 4268.5 9.33% Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer KTGACCTTGA 1e0 -1.153e-01 1.0000 139.0 4.24% 2140.8 4.68% ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer ACCGGAAGTG 1e0 -1.149e-01 1.0000 264.0 8.05% 3954.5 8.64% Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer VGCTGWCAVB 1e0 -1.066e-01 1.0000 447.0 13.63% 6589.9 14.40% SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer GCAACAGGTG 1e0 -8.790e-02 1.0000 64.0 1.95% 1049.1 2.29% Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer YTAATYNRATTA 1e0 -7.440e-02 1.0000 111.0 3.39% 1765.4 3.86% Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer AGGTGTGAAM 1e0 -6.856e-02 1.0000 291.0 8.87% 4407.4 9.63% GFY-Staf(?,Zf)/Promoter/Homer RACTACAATTCCCAGAAKGC 1e0 -4.241e-02 1.0000 4.0 0.12% 112.6 0.25% T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer ACTTTCGTTTCT 1e0 -4.063e-02 1.0000 2.0 0.06% 70.3 0.15% Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer RACTACAACTCCCAGVAKGC 1e0 -4.054e-02 1.0000 1.0 0.03% 45.0 0.10% ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer AACCGGAAGT 1e0 -3.850e-02 1.0000 354.0 10.80% 5388.3 11.77% Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer WATGCAAATGAG 1e0 -3.829e-02 1.0000 109.0 3.32% 1785.3 3.90% GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer NAGATWNBNATCTNN 1e0 -2.967e-02 1.0000 11.0 0.34% 252.4 0.55% OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer YATGCATATRCATRT 1e0 -2.962e-02 1.0000 10.0 0.30% 234.2 0.51% HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer GCACGTACCC 1e0 -2.806e-02 1.0000 54.0 1.65% 960.1 2.10% bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer KCACGTGMCN 1e0 -2.741e-02 1.0000 41.0 1.25% 755.6 1.65% NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer CTGCGCATGCGC 1e0 -2.499e-02 1.0000 3.0 0.09% 101.6 0.22% SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer AAAGRGGAAGTG 1e0 -2.017e-02 1.0000 57.0 1.74% 1024.4 2.24% Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer CYAAAAATAG 1e0 -1.875e-02 1.0000 103.0 3.14% 1742.2 3.81% YY1(Zf)/Promoter/Homer CAAGATGGCGGC 1e0 -1.799e-02 1.0000 7.0 0.21% 191.0 0.42% ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer GTGACCTTGRVN 1e0 -1.694e-02 1.0000 167.0 5.09% 2718.5 5.94% PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer GSCTGTCACTCA 1e0 -1.372e-02 1.0000 10.0 0.30% 254.9 0.56% ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer GCACAYAGTAGGKCY 1e0 -1.338e-02 1.0000 2.0 0.06% 88.8 0.19% PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer ADGGYAGYAGCATCT 1e0 -1.299e-02 1.0000 92.0 2.81% 1595.7 3.49% Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer BTBRAGTGSN 1e0 -1.120e-02 1.0000 524.0 15.98% 7994.0 17.47% Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer CTTTGATGTGSB 1e0 -1.089e-02 1.0000 88.0 2.68% 1543.7 3.37% TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer GAGGTCAAAGGTCA 1e0 -1.023e-02 1.0000 12.0 0.37% 299.1 0.65% Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer TATGCWAATBAV 1e0 -8.586e-03 1.0000 68.0 2.07% 1241.6 2.71% ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer AVCCGGAAGT 1e0 -8.297e-03 1.0000 82.0 2.50% 1464.5 3.20% Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer TTAATTNAATTA 1e0 -7.269e-03 1.0000 44.0 1.34% 861.7 1.88% Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer DCYAAAAATAGM 1e0 -6.122e-03 1.0000 106.0 3.23% 1856.4 4.06% TATA-Box(TBP)/Promoter/Homer CCTTTTAWAGSC 1e0 -5.926e-03 1.0000 361.0 11.01% 5686.9 12.43% GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer RACCGGAAGT 1e0 -5.517e-03 1.0000 200.0 6.10% 3299.1 7.21% Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer ACTTCCKGKT 1e0 -5.167e-03 1.0000 252.0 7.69% 4084.2 8.92% NRF(NRF)/Promoter/Homer STGCGCATGCGC 1e0 -4.408e-03 1.0000 7.0 0.21% 221.2 0.48% HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer GTTAATNATTAA 1e0 -2.075e-03 1.0000 26.0 0.79% 599.2 1.31% Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer GCTATTTTTGGM 1e0 -1.822e-03 1.0000 221.0 6.74% 3696.7 8.08% ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer TTAACCCTTTVNKKN 1e0 -1.805e-03 1.0000 47.0 1.43% 966.6 2.11% HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer TGCCAGCB 1e0 -1.402e-03 1.0000 525.0 16.01% 8227.0 17.98% RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer TAGGGCAAAGGTCA 1e0 -1.081e-03 1.0000 245.0 7.47% 4096.0 8.95% Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer ATATGCAAAT 1e0 -5.490e-04 1.0000 61.0 1.86% 1247.3 2.73% LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer CCTTTGATST 1e0 -3.290e-04 1.0000 191.0 5.82% 3346.1 7.31% TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer ACWTCAAAGG 1e0 -2.460e-04 1.0000 13.0 0.40% 409.4 0.89% PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer VNAGGKCAAAGGTCA 1e0 -9.600e-05 1.0000 224.0 6.83% 3929.2 8.58% Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer GCTATTTTTAGC 1e0 -3.800e-05 1.0000 26.0 0.79% 712.4 1.56% PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer TGACCTTTGCCCCA 1e0 -3.600e-05 1.0000 194.0 5.92% 3515.3 7.68% LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer AAGACCCYYN 1e0 -1.500e-05 1.0000 256.0 7.81% 4531.0 9.90% Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer SCTGTCAVTCAV 1e0 -1.200e-05 1.0000 30.0 0.91% 819.3 1.79% Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer ATTTGCATAW 1e0 -5.000e-06 1.0000 98.0 2.99% 2051.2 4.48% BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer CNNBRGCGCCCCCTGSTGGC 1e0 -4.000e-06 1.0000 9.0 0.27% 405.5 0.89% CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer AYAGTGCCMYCTRGTGGCCA 1e0 -3.000e-06 1.0000 4.0 0.12% 281.5 0.62% Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer SCTGTCAMTCAN 1e0 -1.000e-06 1.0000 29.0 0.88% 856.4 1.87% Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer TAATCAATTA 1e0 -1.000e-06 1.0000 10.0 0.30% 452.4 0.99% Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer ASWTCAAAGG 1e0 -1.000e-06 1.0000 49.0 1.49% 1249.0 2.73% Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer TATTGAYY 1e0 -0.000e+00 1.0000 207.0 6.31% 3950.3 8.63% Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer AGGTGTCA 1e0 -0.000e+00 1.0000 795.0 24.25% 12853.1 28.08% Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer GATTTGCATA 1e0 -0.000e+00 1.0000 51.0 1.56% 1321.7 2.89% Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer DAGGTGTBAA 1e0 -0.000e+00 1.0000 214.0 6.53% 4217.1 9.21% HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer NTATYGATCH 1e0 -0.000e+00 1.0000 97.0 2.96% 2303.9 5.03% CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer TATCGATNAN 1e0 -0.000e+00 1.0000 120.0 3.66% 2810.8 6.14% Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer HNRAATCAAT 1e0 -0.000e+00 1.0000 68.0 2.07% 1909.0 4.17% Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer SNGCACCTGCHS 1e0 -0.000e+00 1.0000 63.0 1.92% 1816.9 3.97% DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer BCWGATTCAATCAAN 1e0 0.000e+00 1.0000 0.0 0.00% 5.8 0.01% E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer NVCACCTGBN 1e0 0.000e+00 1.0000 171.0 5.22% 5228.2 11.42% GFX(?)/Promoter/Homer ATTCTCGCGAGA 1e0 0.000e+00 1.0000 0.0 0.00% 11.6 0.03% REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer GGMGCTGTCCATGGTGCTGA 1e0 0.000e+00 1.0000 0.0 0.00% 24.2 0.05% ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer VCAGGTRDRY 1e0 0.000e+00 1.0000 194.0 5.92% 6415.8 14.02% ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer GNMCAGGTGTGC 1e0 0.000e+00 1.0000 103.0 3.14% 3349.5 7.32% ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer MACCTTCYATGGCTCCCTAKTGCCY 1e0 0.000e+00 1.0000 0.0 0.00% 26.9 0.06%