Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2318)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46645)	% of Background Sequences with Motif
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-368	-8.483e+02	0.0000	567.0	24.46%	1170.8	2.51%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-347	-8.010e+02	0.0000	730.0	31.49%	2432.7	5.22%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-322	-7.425e+02	0.0000	952.0	41.07%	4829.4	10.36%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-297	-6.860e+02	0.0000	795.0	34.30%	3526.1	7.56%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-221	-5.097e+02	0.0000	805.0	34.73%	4739.4	10.16%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-216	-4.983e+02	0.0000	946.0	40.81%	6574.6	14.10%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-215	-4.961e+02	0.0000	918.0	39.60%	6231.9	13.36%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-187	-4.308e+02	0.0000	659.0	28.43%	3673.3	7.88%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-183	-4.222e+02	0.0000	713.0	30.76%	4346.4	9.32%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-181	-4.176e+02	0.0000	989.0	42.67%	7978.6	17.11%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-178	-4.115e+02	0.0000	666.0	28.73%	3892.2	8.35%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-158	-3.656e+02	0.0000	706.0	30.46%	4741.3	10.17%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-134	-3.100e+02	0.0000	311.0	13.42%	1071.6	2.30%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-120	-2.777e+02	0.0000	630.0	27.18%	4645.4	9.96%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-120	-2.767e+02	0.0000	325.0	14.02%	1335.3	2.86%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-118	-2.719e+02	0.0000	359.0	15.49%	1665.7	3.57%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-117	-2.712e+02	0.0000	821.0	35.42%	7341.7	15.74%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-94	-2.181e+02	0.0000	495.0	21.35%	3575.5	7.67%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-86	-1.989e+02	0.0000	394.0	17.00%	2561.5	5.49%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-71	-1.656e+02	0.0000	295.0	12.73%	1750.9	3.75%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-64	-1.479e+02	0.0000	278.0	11.99%	1714.5	3.68%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-58	-1.344e+02	0.0000	212.0	9.15%	1131.7	2.43%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-46	-1.073e+02	0.0000	452.0	19.50%	4475.3	9.60%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-40	-9.230e+01	0.0000	349.0	15.06%	3261.6	6.99%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-36	-8.472e+01	0.0000	286.0	12.34%	2518.7	5.40%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-35	-8.287e+01	0.0000	231.0	9.97%	1830.0	3.92%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-35	-8.216e+01	0.0000	249.0	10.74%	2068.9	4.44%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-35	-8.188e+01	0.0000	139.0	6.00%	785.9	1.69%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-34	-8.024e+01	0.0000	219.0	9.45%	1713.6	3.67%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-34	-7.927e+01	0.0000	86.0	3.71%	319.8	0.69%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-33	-7.792e+01	0.0000	307.0	13.24%	2912.0	6.24%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-33	-7.785e+01	0.0000	223.0	9.62%	1793.8	3.85%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-33	-7.757e+01	0.0000	242.0	10.44%	2040.3	4.38%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-33	-7.630e+01	0.0000	276.0	11.91%	2511.2	5.39%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-32	-7.453e+01	0.0000	270.0	11.65%	2457.8	5.27%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-32	-7.415e+01	0.0000	316.0	13.63%	3104.2	6.66%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-30	-7.055e+01	0.0000	317.0	13.68%	3184.4	6.83%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-27	-6.433e+01	0.0000	192.0	8.28%	1577.2	3.38%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-27	-6.417e+01	0.0000	153.0	6.60%	1101.9	2.36%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-27	-6.390e+01	0.0000	279.0	12.04%	2762.3	5.92%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-27	-6.312e+01	0.0000	157.0	6.77%	1160.3	2.49%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-26	-6.165e+01	0.0000	375.0	16.18%	4237.0	9.09%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-26	-6.049e+01	0.0000	278.0	11.99%	2811.2	6.03%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-25	-5.983e+01	0.0000	94.0	4.06%	500.0	1.07%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-25	-5.894e+01	0.0000	226.0	9.75%	2107.6	4.52%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-23	-5.369e+01	0.0000	301.0	12.99%	3289.8	7.05%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-21	-5.019e+01	0.0000	137.0	5.91%	1071.6	2.30%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-21	-4.965e+01	0.0000	283.0	12.21%	3108.9	6.67%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-17	-4.001e+01	0.0000	1198.0	51.68%	19948.4	42.78%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-17	-3.978e+01	0.0000	106.0	4.57%	820.1	1.76%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-16	-3.743e+01	0.0000	183.0	7.89%	1893.6	4.06%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-15	-3.652e+01	0.0000	105.0	4.53%	849.1	1.82%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-15	-3.509e+01	0.0000	99.0	4.27%	793.2	1.70%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-14	-3.312e+01	0.0000	93.0	4.01%	744.4	1.60%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-13	-3.063e+01	0.0000	129.0	5.57%	1258.4	2.70%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-12	-2.947e+01	0.0000	435.0	18.77%	6221.7	13.34%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-12	-2.904e+01	0.0000	94.0	4.06%	813.1	1.74%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-12	-2.877e+01	0.0000	60.0	2.59%	403.3	0.86%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-12	-2.857e+01	0.0000	37.0	1.60%	171.4	0.37%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-12	-2.810e+01	0.0000	362.0	15.62%	5019.1	10.76%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-12	-2.780e+01	0.0000	484.0	20.88%	7156.2	15.35%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-11	-2.658e+01	0.0000	278.0	11.99%	3664.4	7.86%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-11	-2.642e+01	0.0000	438.0	18.90%	6407.3	13.74%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-11	-2.576e+01	0.0000	389.0	16.78%	5580.5	11.97%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-11	-2.542e+01	0.0000	48.0	2.07%	303.2	0.65%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-10	-2.430e+01	0.0000	314.0	13.55%	4352.8	9.33%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-10	-2.418e+01	0.0000	95.0	4.10%	904.7	1.94%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-10	-2.382e+01	0.0000	276.0	11.91%	3730.5	8.00%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-10	-2.361e+01	0.0000	183.0	7.89%	2224.8	4.77%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-10	-2.352e+01	0.0000	101.0	4.36%	999.3	2.14%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-9	-2.292e+01	0.0000	228.0	9.84%	2968.2	6.37%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-9	-2.168e+01	0.0000	61.0	2.63%	496.2	1.06%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-9	-2.153e+01	0.0000	68.0	2.93%	587.7	1.26%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-9	-2.108e+01	0.0000	439.0	18.94%	6685.6	14.34%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-8	-2.044e+01	0.0000	32.0	1.38%	178.5	0.38%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-8	-2.007e+01	0.0000	563.0	24.29%	8999.6	19.30%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-8	-1.982e+01	0.0000	223.0	9.62%	2995.6	6.42%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-7	-1.815e+01	0.0000	246.0	10.61%	3447.7	7.39%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-7	-1.810e+01	0.0000	612.0	26.40%	10036.1	21.52%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-7	-1.808e+01	0.0000	131.0	5.65%	1568.9	3.36%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-7	-1.786e+01	0.0000	513.0	22.13%	8215.7	17.62%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-7	-1.781e+01	0.0000	27.0	1.16%	148.5	0.32%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-7	-1.751e+01	0.0000	56.0	2.42%	491.2	1.05%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-7	-1.743e+01	0.0000	313.0	13.50%	4637.3	9.94%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-7	-1.713e+01	0.0000	228.0	9.84%	3184.4	6.83%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-7	-1.712e+01	0.0000	124.0	5.35%	1486.3	3.19%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-6	-1.560e+01	0.0000	213.0	9.19%	2994.5	6.42%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-6	-1.541e+01	0.0000	85.0	3.67%	937.9	2.01%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-6	-1.479e+01	0.0000	82.0	3.54%	907.4	1.95%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-6	-1.468e+01	0.0000	149.0	6.43%	1962.1	4.21%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-5	-1.366e+01	0.0000	60.0	2.59%	612.1	1.31%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-5	-1.356e+01	0.0000	366.0	15.79%	5799.7	12.44%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-5	-1.326e+01	0.0000	569.0	24.55%	9582.4	20.55%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-5	-1.310e+01	0.0000	149.0	6.43%	2020.4	4.33%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-5	-1.310e+01	0.0000	212.0	9.15%	3089.8	6.63%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-5	-1.265e+01	0.0000	23.0	0.99%	149.1	0.32%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-5	-1.263e+01	0.0000	85.0	3.67%	1007.7	2.16%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-5	-1.259e+01	0.0000	79.0	3.41%	916.4	1.97%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-5	-1.230e+01	0.0000	118.0	5.09%	1540.8	3.30%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-5	-1.188e+01	0.0000	233.0	10.05%	3517.9	7.54%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-4	-1.150e+01	0.0000	76.0	3.28%	899.2	1.93%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-4	-1.129e+01	0.0001	13.0	0.56%	59.0	0.13%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-4	-1.095e+01	0.0001	146.0	6.30%	2057.7	4.41%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-4	-1.064e+01	0.0001	250.0	10.79%	3889.5	8.34%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-4	-1.026e+01	0.0001	186.0	8.02%	2778.4	5.96%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-4	-1.024e+01	0.0001	23.0	0.99%	175.0	0.38%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-4	-9.779e+00	0.0002	185.0	7.98%	2786.7	5.98%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-4	-9.456e+00	0.0003	267.0	11.52%	4270.5	9.16%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-3	-9.194e+00	0.0004	63.0	2.72%	762.2	1.63%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-3	-9.021e+00	0.0005	109.0	4.70%	1515.6	3.25%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-3	-8.833e+00	0.0006	183.0	7.89%	2803.7	6.01%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-3	-8.784e+00	0.0006	325.0	14.02%	5381.1	11.54%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-3	-8.485e+00	0.0008	209.0	9.02%	3287.9	7.05%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-8.443e+00	0.0008	18.0	0.78%	135.3	0.29%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-3	-8.078e+00	0.0012	776.0	33.48%	14066.1	30.16%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-3	-7.440e+00	0.0022	200.0	8.63%	3193.7	6.85%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-3	-7.403e+00	0.0022	321.0	13.85%	5420.9	11.62%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-3	-7.333e+00	0.0024	360.0	15.53%	6156.6	13.20%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-3	-7.069e+00	0.0031	52.0	2.24%	652.1	1.40%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-2	-6.849e+00	0.0038	31.0	1.34%	336.2	0.72%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-6.612e+00	0.0048	251.0	10.83%	4187.9	8.98%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-2	-6.577e+00	0.0049	236.0	10.18%	3913.2	8.39%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-6.482e+00	0.0053	809.0	34.90%	14918.9	31.99%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-2	-6.308e+00	0.0063	74.0	3.19%	1040.1	2.23%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-6.289e+00	0.0064	287.0	12.38%	4884.5	10.47%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-2	-6.190e+00	0.0070	103.0	4.44%	1543.4	3.31%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-2	-6.169e+00	0.0071	167.0	7.20%	2684.0	5.76%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-5.511e+00	0.0135	65.0	2.80%	922.7	1.98%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-2	-5.494e+00	0.0136	74.0	3.19%	1076.3	2.31%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-2	-5.402e+00	0.0148	620.0	26.75%	11367.1	24.38%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-5.374e+00	0.0152	42.0	1.81%	546.1	1.17%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-5.369e+00	0.0152	95.0	4.10%	1447.8	3.10%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-2	-5.317e+00	0.0158	221.0	9.53%	3741.3	8.02%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-2	-4.793e+00	0.0265	121.0	5.22%	1946.6	4.17%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-4.580e+00	0.0325	57.0	2.46%	827.6	1.77%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-4.472e+00	0.0359	23.0	0.99%	272.6	0.58%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-4.353e+00	0.0402	45.0	1.94%	633.6	1.36%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-4.249e+00	0.0443	10.0	0.43%	88.4	0.19%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-4.207e+00	0.0459	37.0	1.60%	505.6	1.08%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-4.057e+00	0.0529	108.0	4.66%	1762.0	3.78%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-1	-3.963e+00	0.0577	555.0	23.94%	10315.4	22.12%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.945e+00	0.0583	58.0	2.50%	875.6	1.88%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-1	-3.801e+00	0.0669	282.0	12.17%	5051.1	10.83%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.647e+00	0.0775	133.0	5.74%	2254.1	4.83%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.592e+00	0.0813	90.0	3.88%	1468.6	3.15%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-1	-3.589e+00	0.0813	76.0	3.28%	1215.5	2.61%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-3.560e+00	0.0828	176.0	7.59%	3066.1	6.57%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-3.557e+00	0.0828	103.0	4.44%	1708.7	3.66%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.525e+00	0.0846	95.0	4.10%	1564.9	3.36%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-1	-3.501e+00	0.0861	437.0	18.85%	8087.7	17.34%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-3.301e+00	0.1044	55.0	2.37%	857.3	1.84%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.200e+00	0.1148	63.0	2.72%	1006.2	2.16%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-3.174e+00	0.1170	178.0	7.68%	3145.5	6.75%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-3.169e+00	0.1170	230.0	9.92%	4136.2	8.87%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-2.878e+00	0.1553	383.0	16.52%	7138.5	15.31%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-2.840e+00	0.1603	260.0	11.22%	4757.8	10.20%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-1	-2.785e+00	0.1682	18.0	0.78%	241.9	0.52%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.761e+00	0.1713	322.0	13.89%	5970.7	12.80%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-2.459e+00	0.2301	42.0	1.81%	674.0	1.45%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-2.452e+00	0.2305	16.0	0.69%	219.2	0.47%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-1	-2.380e+00	0.2461	566.0	24.42%	10833.8	23.23%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-2.364e+00	0.2485	77.0	3.32%	1325.7	2.84%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.301e+00	0.2630	83.0	3.58%	1443.6	3.10%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.160e+00	0.3010	21.0	0.91%	316.5	0.68%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.143e+00	0.3043	97.0	4.18%	1723.9	3.70%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.072e+00	0.3247	865.0	37.32%	16858.6	36.15%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.061e+00	0.3263	14.0	0.60%	199.1	0.43%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.048e+00	0.3285	26.0	1.12%	410.9	0.88%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.036e+00	0.3307	45.0	1.94%	757.5	1.62%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.979e+00	0.3480	134.0	5.78%	2450.3	5.25%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.973e+00	0.3480	73.0	3.15%	1286.3	2.76%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.948e+00	0.3548	87.0	3.75%	1554.1	3.33%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.943e+00	0.3548	145.0	6.26%	2667.6	5.72%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.884e+00	0.3738	150.0	6.47%	2772.6	5.95%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.800e+00	0.4045	5.0	0.22%	58.3	0.13%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.780e+00	0.4102	59.0	2.55%	1040.3	2.23%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.716e+00	0.4348	66.0	2.85%	1179.2	2.53%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.714e+00	0.4348	95.0	4.10%	1734.5	3.72%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.615e+00	0.4755	145.0	6.26%	2716.4	5.83%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.606e+00	0.4772	313.0	13.50%	6016.0	12.90%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.605e+00	0.4772	211.0	9.10%	4008.8	8.60%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.602e+00	0.4772	3.0	0.13%	32.0	0.07%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.561e+00	0.4912	39.0	1.68%	682.1	1.46%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.554e+00	0.4916	8.0	0.35%	114.2	0.24%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.550e+00	0.4916	330.0	14.24%	6364.0	13.65%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.496e+00	0.5156	372.0	16.05%	7209.2	15.46%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.488e+00	0.5170	23.0	0.99%	388.6	0.83%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-1.484e+00	0.5170	615.0	26.53%	12045.2	25.83%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.471e+00	0.5204	198.0	8.54%	3779.6	8.11%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.420e+00	0.5444	83.0	3.58%	1541.0	3.30%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.399e+00	0.5532	34.0	1.47%	601.9	1.29%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.389e+00	0.5532	25.0	1.08%	432.8	0.93%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.389e+00	0.5532	25.0	1.08%	432.8	0.93%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.376e+00	0.5571	21.0	0.91%	358.6	0.77%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-1.363e+00	0.5614	107.0	4.62%	2016.0	4.32%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.351e+00	0.5657	333.0	14.37%	6474.5	13.88%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.331e+00	0.5741	335.0	14.45%	6519.5	13.98%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.324e+00	0.5752	85.0	3.67%	1592.5	3.42%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.283e+00	0.5961	15.0	0.65%	252.6	0.54%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.254e+00	0.6107	27.0	1.16%	480.3	1.03%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.236e+00	0.6185	153.0	6.60%	2940.6	6.31%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.226e+00	0.6216	4.0	0.17%	55.8	0.12%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.225e+00	0.6216	58.0	2.50%	1080.3	2.32%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-1.205e+00	0.6288	27.0	1.16%	484.3	1.04%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.173e+00	0.6461	13.0	0.56%	221.5	0.47%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.167e+00	0.6466	215.0	9.28%	4181.1	8.97%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-1.160e+00	0.6479	349.0	15.06%	6846.5	14.68%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.159e+00	0.6479	115.0	4.96%	2207.0	4.73%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.132e+00	0.6602	39.0	1.68%	722.0	1.55%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.115e+00	0.6685	44.0	1.90%	821.8	1.76%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.089e+00	0.6824	562.0	24.25%	11123.9	23.85%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.073e+00	0.6903	36.0	1.55%	670.0	1.44%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.043e+00	0.7082	9.0	0.39%	153.9	0.33%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.010e+00	0.7281	14.0	0.60%	250.8	0.54%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.005e+00	0.7286	20.0	0.86%	366.5	0.79%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-9.955e-01	0.7322	42.0	1.81%	796.2	1.71%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-9.887e-01	0.7338	32.0	1.38%	601.3	1.29%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-9.719e-01	0.7428	115.0	4.96%	2242.2	4.81%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-9.672e-01	0.7429	24.0	1.04%	447.9	0.96%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-9.435e-01	0.7573	15.0	0.65%	274.9	0.59%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-9.395e-01	0.7573	161.0	6.95%	3164.0	6.79%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-9.289e-01	0.7615	99.0	4.27%	1933.1	4.15%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-9.226e-01	0.7629	164.0	7.08%	3228.2	6.92%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-9.038e-01	0.7739	99.0	4.27%	1938.7	4.16%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-8.977e-01	0.7752	198.0	8.54%	3913.8	8.39%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-8.939e-01	0.7752	151.0	6.51%	2976.0	6.38%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-8.916e-01	0.7752	188.0	8.11%	3715.5	7.97%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-8.876e-01	0.7752	26.0	1.12%	494.4	1.06%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-8.694e-01	0.7835	155.0	6.69%	3062.7	6.57%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-8.692e-01	0.7835	352.0	15.19%	7003.5	15.02%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-8.226e-01	0.8139	2.0	0.09%	30.9	0.07%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-8.218e-01	0.8139	3.0	0.13%	49.5	0.11%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-8.097e-01	0.8174	10.0	0.43%	186.3	0.40%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-7.609e-01	0.8546	13.0	0.56%	249.2	0.53%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-7.516e-01	0.8589	82.0	3.54%	1630.2	3.50%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-7.439e-01	0.8619	124.0	5.35%	2474.0	5.31%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-7.423e-01	0.8619	1.0	0.04%	13.2	0.03%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-7.422e-01	0.8619	117.0	5.05%	2334.8	5.01%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-7.306e-01	0.8625	104.0	4.49%	2076.3	4.45%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-7.118e-01	0.8752	221.0	9.53%	4432.8	9.51%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.897e-01	0.8910	12.0	0.52%	235.4	0.50%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.686e-01	0.9062	18.0	0.78%	358.9	0.77%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.431e-01	0.9259	15.0	0.65%	300.4	0.64%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-6.073e-01	0.9556	33.0	1.42%	670.6	1.44%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-6.023e-01	0.9566	160.0	6.90%	3241.8	6.95%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-5.682e-01	0.9857	48.0	2.07%	982.4	2.11%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-5.650e-01	0.9857	276.0	11.91%	5599.7	12.01%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.506e-01	0.9951	9.0	0.39%	186.6	0.40%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-5.470e-01	0.9951	55.0	2.37%	1130.0	2.42%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-5.453e-01	0.9951	11.0	0.47%	228.8	0.49%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.152e-01	1.0000	5.0	0.22%	105.6	0.23%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-4.938e-01	1.0000	136.0	5.87%	2793.2	5.99%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.884e-01	1.0000	12.0	0.52%	255.2	0.55%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-4.884e-01	1.0000	19.0	0.82%	401.1	0.86%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-4.868e-01	1.0000	20.0	0.86%	422.7	0.91%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.839e-01	1.0000	3.0	0.13%	64.2	0.14%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-4.826e-01	1.0000	208.0	8.97%	4260.7	9.14%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.813e-01	1.0000	241.0	10.40%	4930.3	10.57%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-4.772e-01	1.0000	101.0	4.36%	2086.7	4.47%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.678e-01	1.0000	438.0	18.90%	8926.4	19.14%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-4.503e-01	1.0000	33.0	1.42%	699.0	1.50%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-4.457e-01	1.0000	69.0	2.98%	1441.7	3.09%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-4.352e-01	1.0000	88.0	3.80%	1834.2	3.93%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-4.350e-01	1.0000	6.0	0.26%	133.6	0.29%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-4.161e-01	1.0000	17.0	0.73%	370.4	0.79%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.994e-01	1.0000	352.0	15.19%	7228.1	15.50%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-3.966e-01	1.0000	46.0	1.98%	980.8	2.10%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.947e-01	1.0000	238.0	10.27%	4914.7	10.54%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.865e-01	1.0000	53.0	2.29%	1128.3	2.42%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.840e-01	1.0000	21.0	0.91%	460.4	0.99%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-3.820e-01	1.0000	243.0	10.48%	5023.3	10.77%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-3.777e-01	1.0000	157.0	6.77%	3270.2	7.01%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.749e-01	1.0000	23.0	0.99%	504.8	1.08%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-3.743e-01	1.0000	8.0	0.35%	183.1	0.39%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.723e-01	1.0000	30.0	1.29%	652.7	1.40%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.639e-01	1.0000	60.0	2.59%	1280.9	2.75%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.501e-01	1.0000	170.0	7.33%	3550.8	7.61%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.463e-01	1.0000	12.0	0.52%	274.7	0.59%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-3.435e-01	1.0000	192.0	8.28%	4004.6	8.59%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.312e-01	1.0000	20.0	0.86%	449.8	0.96%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.980e-01	1.0000	13.0	0.56%	304.9	0.65%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.944e-01	1.0000	4.0	0.17%	102.6	0.22%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.928e-01	1.0000	28.0	1.21%	629.1	1.35%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-2.921e-01	1.0000	53.0	2.29%	1158.3	2.48%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.896e-01	1.0000	17.0	0.73%	393.2	0.84%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.810e-01	1.0000	5.0	0.22%	128.0	0.27%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.781e-01	1.0000	65.0	2.80%	1415.9	3.04%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.766e-01	1.0000	203.0	8.76%	4271.4	9.16%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.732e-01	1.0000	109.0	4.70%	2334.6	5.01%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.725e-01	1.0000	182.0	7.85%	3842.8	8.24%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.724e-01	1.0000	224.0	9.66%	4705.8	10.09%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-2.657e-01	1.0000	113.0	4.87%	2421.3	5.19%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.656e-01	1.0000	5.0	0.22%	129.1	0.28%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.641e-01	1.0000	575.0	24.81%	11867.4	25.45%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-2.573e-01	1.0000	233.0	10.05%	4902.0	10.51%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.539e-01	1.0000	15.0	0.65%	357.9	0.77%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-2.468e-01	1.0000	173.0	7.46%	3674.8	7.88%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.409e-01	1.0000	1.0	0.04%	31.4	0.07%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.311e-01	1.0000	28.0	1.21%	647.7	1.39%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.277e-01	1.0000	195.0	8.41%	4142.6	8.88%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.216e-01	1.0000	46.0	1.98%	1037.9	2.23%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.207e-01	1.0000	136.0	5.87%	2926.6	6.28%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.142e-01	1.0000	33.0	1.42%	762.0	1.63%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.110e-01	1.0000	14.0	0.60%	345.3	0.74%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-2.027e-01	1.0000	548.0	23.64%	11390.6	24.43%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.953e-01	1.0000	143.0	6.17%	3090.6	6.63%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.924e-01	1.0000	44.0	1.90%	1007.1	2.16%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.871e-01	1.0000	38.0	1.64%	880.2	1.89%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.793e-01	1.0000	18.0	0.78%	444.5	0.95%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.755e-01	1.0000	13.0	0.56%	332.1	0.71%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.742e-01	1.0000	79.0	3.41%	1763.2	3.78%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.703e-01	1.0000	88.0	3.80%	1956.9	4.20%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.655e-01	1.0000	13.0	0.56%	335.8	0.72%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.627e-01	1.0000	35.0	1.51%	827.0	1.77%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.495e-01	1.0000	108.0	4.66%	2394.0	5.13%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.482e-01	1.0000	213.0	9.19%	4589.4	9.84%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.471e-01	1.0000	1.0	0.04%	41.0	0.09%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.458e-01	1.0000	18.0	0.78%	456.9	0.98%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.436e-01	1.0000	362.0	15.62%	7670.7	16.45%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.427e-01	1.0000	367.0	15.83%	7774.8	16.67%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.416e-01	1.0000	224.0	9.66%	4825.2	10.35%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.413e-01	1.0000	63.0	2.72%	1444.9	3.10%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-1.408e-01	1.0000	386.0	16.65%	8167.4	17.51%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.358e-01	1.0000	96.0	4.14%	2152.6	4.62%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.168e-01	1.0000	47.0	2.03%	1115.6	2.39%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.104e-01	1.0000	216.0	9.32%	4700.9	10.08%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-1.099e-01	1.0000	578.0	24.94%	12152.5	26.06%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.062e-01	1.0000	129.0	5.57%	2881.7	6.18%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.044e-01	1.0000	355.0	15.31%	7590.5	16.28%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.018e-01	1.0000	215.0	9.28%	4692.1	10.06%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.016e-01	1.0000	1.0	0.04%	47.3	0.10%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-9.453e-02	1.0000	306.0	13.20%	6596.3	14.15%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-9.138e-02	1.0000	9.0	0.39%	267.5	0.57%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-8.870e-02	1.0000	210.0	9.06%	4609.9	9.89%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-8.491e-02	1.0000	98.0	4.23%	2248.5	4.82%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-8.329e-02	1.0000	127.0	5.48%	2869.1	6.15%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-8.219e-02	1.0000	53.0	2.29%	1276.7	2.74%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-7.954e-02	1.0000	72.0	3.11%	1694.0	3.63%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-7.013e-02	1.0000	23.0	0.99%	613.8	1.32%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.785e-02	1.0000	9.0	0.39%	279.8	0.60%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.785e-02	1.0000	9.0	0.39%	279.8	0.60%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-6.785e-02	1.0000	9.0	0.39%	280.0	0.60%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.700e-02	1.0000	169.0	7.29%	3787.7	8.12%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-6.584e-02	1.0000	7.0	0.30%	229.8	0.49%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-5.892e-02	1.0000	182.0	7.85%	4079.2	8.75%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.197e-02	1.0000	43.0	1.86%	1089.8	2.34%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-5.189e-02	1.0000	1.0	0.04%	60.5	0.13%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.107e-02	1.0000	330.0	14.24%	7201.3	15.44%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-4.602e-02	1.0000	62.0	2.67%	1523.8	3.27%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-4.208e-02	1.0000	21.0	0.91%	594.4	1.27%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-4.062e-02	1.0000	76.0	3.28%	1843.7	3.95%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-4.040e-02	1.0000	13.0	0.56%	401.5	0.86%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-3.932e-02	1.0000	252.0	10.87%	5611.5	12.03%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.835e-02	1.0000	15.0	0.65%	454.0	0.97%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.809e-02	1.0000	395.0	17.04%	8601.1	18.44%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-3.194e-02	1.0000	163.0	7.03%	3752.7	8.05%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-3.076e-02	1.0000	202.0	8.71%	4588.6	9.84%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-2.689e-02	1.0000	34.0	1.47%	926.3	1.99%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.596e-02	1.0000	5.0	0.22%	205.9	0.44%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.513e-02	1.0000	30.0	1.29%	836.5	1.79%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.026e-02	1.0000	134.0	5.78%	3177.2	6.81%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.020e-02	1.0000	420.0	18.12%	9225.5	19.78%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.895e-02	1.0000	7.0	0.30%	272.2	0.58%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.812e-02	1.0000	799.0	34.47%	17039.0	36.54%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.543e-02	1.0000	1.0	0.04%	84.0	0.18%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-1.467e-02	1.0000	1.0	0.04%	85.1	0.18%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.179e-02	1.0000	257.0	11.09%	5878.9	12.61%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.138e-02	1.0000	28.0	1.21%	831.0	1.78%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.093e-02	1.0000	346.0	14.93%	7769.2	16.66%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.069e-02	1.0000	395.0	17.04%	8800.7	18.87%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-9.790e-03	1.0000	36.0	1.55%	1032.5	2.21%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-9.237e-03	1.0000	3.0	0.13%	171.3	0.37%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-8.447e-03	1.0000	109.0	4.70%	2710.9	5.81%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-7.364e-03	1.0000	121.0	5.22%	2988.6	6.41%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.819e-03	1.0000	449.0	19.37%	10016.2	21.48%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-5.409e-03	1.0000	93.0	4.01%	2388.7	5.12%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-4.341e-03	1.0000	277.0	11.95%	6424.1	13.78%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-4.128e-03	1.0000	355.0	15.31%	8087.6	17.34%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.057e-03	1.0000	569.0	24.55%	12565.1	26.94%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.003e-03	1.0000	170.0	7.33%	4122.5	8.84%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.617e-03	1.0000	1.0	0.04%	113.4	0.24%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.513e-03	1.0000	75.0	3.24%	2009.7	4.31%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-2.601e-03	1.0000	240.0	10.35%	5686.3	12.19%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.017e-03	1.0000	309.0	13.33%	7195.5	15.43%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.965e-03	1.0000	38.0	1.64%	1166.9	2.50%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.920e-03	1.0000	8.0	0.35%	374.2	0.80%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.879e-03	1.0000	32.0	1.38%	1020.0	2.19%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.606e-03	1.0000	94.0	4.06%	2500.9	5.36%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.423e-03	1.0000	39.0	1.68%	1207.9	2.59%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.127e-03	1.0000	125.0	5.39%	3231.7	6.93%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.063e-03	1.0000	3.0	0.13%	224.1	0.48%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-9.150e-04	1.0000	51.0	2.20%	1524.7	3.27%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-8.020e-04	1.0000	476.0	20.53%	10840.0	23.25%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.800e-04	1.0000	419.0	18.08%	9723.4	20.85%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-3.420e-04	1.0000	124.0	5.35%	3296.9	7.07%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.120e-04	1.0000	23.0	0.99%	862.9	1.85%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.050e-04	1.0000	848.0	36.58%	18719.6	40.14%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.990e-04	1.0000	189.0	8.15%	4803.1	10.30%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.800e-04	1.0000	813.0	35.07%	18018.8	38.64%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.790e-04	1.0000	4.0	0.17%	305.1	0.65%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-3.000e-05	1.0000	273.0	11.78%	6817.1	14.62%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-2.900e-05	1.0000	155.0	6.69%	4177.7	8.96%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.000e-06	1.0000	52.0	2.24%	1822.9	3.91%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	590.0	25.45%	14013.1	30.05%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-0.000e+00	1.0000	225.0	9.71%	6073.3	13.02%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	35.0	1.51%	1462.6	3.14%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-0.000e+00	1.0000	150.0	6.47%	4399.3	9.43%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-0.000e+00	1.0000	319.0	13.76%	8276.2	17.75%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-0.000e+00	1.0000	60.0	2.59%	2213.4	4.75%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-0.000e+00	1.0000	71.0	3.06%	2557.8	5.49%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-0.000e+00	1.0000	59.0	2.55%	2239.0	4.80%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-0.000e+00	1.0000	147.0	6.34%	4509.3	9.67%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-0.000e+00	1.0000	168.0	7.25%	5046.0	10.82%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-0.000e+00	1.0000	57.0	2.46%	2271.4	4.87%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-0.000e+00	1.0000	124.0	5.35%	4014.9	8.61%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-0.000e+00	1.0000	106.0	4.57%	3630.4	7.79%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-0.000e+00	1.0000	81.0	3.49%	3078.3	6.60%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-0.000e+00	1.0000	100.0	4.31%	3714.3	7.97%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	40.0	1.73%	2106.8	4.52%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-0.000e+00	1.0000	157.0	6.77%	5287.7	11.34%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	7.9	0.02%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	102.0	4.40%	5917.3	12.69%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	119.1	0.26%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	56.5	0.12%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	29.1	0.06%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	102.0	4.40%	7206.0	15.45%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	56.0	2.42%	3769.9	8.08%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	18.6	0.04%