Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2706)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45374)	% of Background Sequences with Motif
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-154	-3.550e+02	0.0000	400.0	14.78%	1311.3	2.89%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-150	-3.477e+02	0.0000	569.0	21.02%	2703.6	5.96%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-131	-3.021e+02	0.0000	253.0	9.35%	568.3	1.25%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-120	-2.784e+02	0.0000	356.0	13.15%	1320.9	2.91%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-83	-1.931e+02	0.0000	1003.0	37.05%	9401.6	20.73%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-48	-1.115e+02	0.0000	410.0	15.15%	3144.7	6.93%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-48	-1.111e+02	0.0000	340.0	12.56%	2366.5	5.22%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-40	-9.227e+01	0.0000	273.0	10.08%	1857.1	4.10%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-36	-8.383e+01	0.0000	1214.0	44.85%	15005.4	33.09%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-35	-8.174e+01	0.0000	943.0	34.84%	10926.1	24.09%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-33	-7.631e+01	0.0000	276.0	10.20%	2080.5	4.59%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-32	-7.509e+01	0.0000	276.0	10.20%	2096.7	4.62%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-24	-5.623e+01	0.0000	1072.0	39.60%	13727.6	30.27%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-23	-5.322e+01	0.0000	139.0	5.13%	879.0	1.94%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-22	-5.248e+01	0.0000	394.0	14.55%	3945.8	8.70%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-20	-4.616e+01	0.0000	1277.0	47.17%	17408.0	38.39%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-20	-4.609e+01	0.0000	651.0	24.05%	7717.8	17.02%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-18	-4.337e+01	0.0000	610.0	22.53%	7210.7	15.90%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-17	-4.014e+01	0.0000	1264.0	46.69%	17476.0	38.54%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-16	-3.815e+01	0.0000	464.0	17.14%	5283.6	11.65%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-16	-3.786e+01	0.0000	505.0	18.66%	5876.1	12.96%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-16	-3.769e+01	0.0000	604.0	22.31%	7320.4	16.14%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-15	-3.673e+01	0.0000	757.0	27.96%	9646.4	21.27%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-15	-3.612e+01	0.0000	921.0	34.02%	12199.4	26.90%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-15	-3.585e+01	0.0000	575.0	21.24%	6961.2	15.35%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-15	-3.551e+01	0.0000	307.0	11.34%	3193.9	7.04%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-15	-3.517e+01	0.0000	326.0	12.04%	3457.2	7.62%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-14	-3.266e+01	0.0000	695.0	25.67%	8877.5	19.58%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-13	-3.188e+01	0.0000	395.0	14.59%	4506.6	9.94%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-13	-3.184e+01	0.0000	296.0	10.93%	3140.5	6.93%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-13	-3.092e+01	0.0000	735.0	27.15%	9562.7	21.09%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-13	-3.047e+01	0.0000	453.0	16.73%	5380.8	11.87%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-13	-3.031e+01	0.0000	326.0	12.04%	3592.1	7.92%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-13	-2.995e+01	0.0000	87.0	3.21%	591.6	1.30%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-12	-2.832e+01	0.0000	331.0	12.23%	3721.2	8.21%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-12	-2.821e+01	0.0000	265.0	9.79%	2819.4	6.22%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-11	-2.707e+01	0.0000	263.0	9.72%	2823.6	6.23%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-11	-2.687e+01	0.0000	222.0	8.20%	2280.5	5.03%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-11	-2.656e+01	0.0000	536.0	19.80%	6749.7	14.88%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-11	-2.591e+01	0.0000	115.0	4.25%	956.2	2.11%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-11	-2.555e+01	0.0000	843.0	31.14%	11501.4	25.36%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-10	-2.398e+01	0.0000	241.0	8.90%	2611.2	5.76%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-10	-2.392e+01	0.0000	504.0	18.62%	6386.7	14.08%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-10	-2.392e+01	0.0000	199.0	7.35%	2050.4	4.52%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-9	-2.293e+01	0.0000	270.0	9.97%	3041.1	6.71%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-9	-2.243e+01	0.0000	232.0	8.57%	2533.3	5.59%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-9	-2.241e+01	0.0000	115.0	4.25%	1016.0	2.24%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-9	-2.183e+01	0.0000	159.0	5.87%	1578.4	3.48%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-9	-2.159e+01	0.0000	192.0	7.09%	2017.4	4.45%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-9	-2.147e+01	0.0000	1055.0	38.97%	15120.1	33.34%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-9	-2.104e+01	0.0000	180.0	6.65%	1872.1	4.13%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-8	-1.997e+01	0.0000	332.0	12.26%	4024.1	8.87%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-8	-1.967e+01	0.0000	577.0	21.32%	7694.7	16.97%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-8	-1.856e+01	0.0000	174.0	6.43%	1858.5	4.10%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-8	-1.855e+01	0.0000	137.0	5.06%	1371.0	3.02%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-8	-1.854e+01	0.0000	689.0	25.45%	9489.2	20.93%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-7	-1.799e+01	0.0000	235.0	8.68%	2714.2	5.99%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-7	-1.635e+01	0.0000	242.0	8.94%	2871.5	6.33%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-7	-1.620e+01	0.0000	141.0	5.21%	1481.2	3.27%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-6	-1.611e+01	0.0000	105.0	3.88%	1016.0	2.24%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-6	-1.600e+01	0.0000	1522.0	56.22%	23236.1	51.24%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-6	-1.594e+01	0.0000	178.0	6.58%	1989.3	4.39%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-6	-1.580e+01	0.0000	120.0	4.43%	1215.5	2.68%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-6	-1.578e+01	0.0000	611.0	22.57%	8442.8	18.62%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-6	-1.558e+01	0.0000	373.0	13.78%	4818.6	10.63%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-6	-1.509e+01	0.0000	173.0	6.39%	1947.5	4.29%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-6	-1.481e+01	0.0000	910.0	33.62%	13248.1	29.21%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-6	-1.445e+01	0.0000	61.0	2.25%	508.9	1.12%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-6	-1.407e+01	0.0000	101.0	3.73%	1010.8	2.23%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-5	-1.373e+01	0.0000	511.0	18.88%	7019.3	15.48%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-5	-1.371e+01	0.0000	660.0	24.38%	9346.8	20.61%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-5	-1.331e+01	0.0000	198.0	7.31%	2359.4	5.20%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-5	-1.331e+01	0.0000	209.0	7.72%	2516.6	5.55%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-5	-1.311e+01	0.0000	175.0	6.46%	2041.7	4.50%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-5	-1.233e+01	0.0000	269.0	9.94%	3431.6	7.57%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-5	-1.229e+01	0.0000	207.0	7.65%	2528.8	5.58%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-5	-1.223e+01	0.0000	198.0	7.31%	2401.5	5.30%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-5	-1.191e+01	0.0000	633.0	23.38%	9050.0	19.96%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-5	-1.184e+01	0.0000	83.0	3.07%	830.7	1.83%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-5	-1.183e+01	0.0000	131.0	4.84%	1472.4	3.25%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-5	-1.181e+01	0.0000	421.0	15.55%	5752.4	12.69%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-5	-1.156e+01	0.0000	150.0	5.54%	1745.6	3.85%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-5	-1.155e+01	0.0000	222.0	8.20%	2777.1	6.12%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-4	-1.147e+01	0.0001	193.0	7.13%	2360.4	5.21%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-4	-1.142e+01	0.0001	56.0	2.07%	500.8	1.10%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-4	-1.126e+01	0.0001	84.0	3.10%	857.6	1.89%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-4	-1.120e+01	0.0001	316.0	11.67%	4190.4	9.24%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-4	-1.083e+01	0.0001	147.0	5.43%	1729.2	3.81%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-4	-1.082e+01	0.0001	133.0	4.91%	1533.2	3.38%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-4	-1.074e+01	0.0001	122.0	4.51%	1383.9	3.05%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-4	-1.055e+01	0.0001	327.0	12.08%	4393.3	9.69%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-4	-1.054e+01	0.0001	413.0	15.26%	5710.3	12.59%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-4	-1.052e+01	0.0001	90.0	3.32%	955.5	2.11%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-4	-1.045e+01	0.0001	623.0	23.01%	9005.7	19.86%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-4	-1.025e+01	0.0002	396.0	14.63%	5467.7	12.06%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-4	-1.011e+01	0.0002	217.0	8.02%	2770.6	6.11%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-4	-9.831e+00	0.0002	283.0	10.45%	3769.6	8.31%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-4	-9.788e+00	0.0002	277.0	10.23%	3681.1	8.12%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-4	-9.551e+00	0.0003	93.0	3.44%	1023.4	2.26%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-4	-9.409e+00	0.0004	194.0	7.17%	2465.0	5.44%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-3	-9.026e+00	0.0005	278.0	10.27%	3740.2	8.25%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-3	-8.639e+00	0.0007	246.0	9.09%	3279.6	7.23%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-3	-8.520e+00	0.0008	93.0	3.44%	1055.1	2.33%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-3	-8.417e+00	0.0009	460.0	16.99%	6596.5	14.55%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-3	-8.363e+00	0.0010	401.0	14.81%	5677.9	12.52%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-3	-8.308e+00	0.0010	176.0	6.50%	2253.2	4.97%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-3	-8.218e+00	0.0011	313.0	11.56%	4325.2	9.54%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-3	-8.023e+00	0.0013	359.0	13.26%	5049.2	11.13%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-3	-7.943e+00	0.0014	161.0	5.95%	2051.0	4.52%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-3	-7.859e+00	0.0015	96.0	3.55%	1119.6	2.47%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-3	-7.806e+00	0.0016	583.0	21.54%	8597.4	18.96%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-3	-7.771e+00	0.0016	275.0	10.16%	3772.3	8.32%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-3	-7.759e+00	0.0016	317.0	11.71%	4418.5	9.74%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-3	-7.673e+00	0.0017	180.0	6.65%	2344.9	5.17%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-3	-7.631e+00	0.0018	522.0	19.28%	7642.2	16.85%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-3	-7.285e+00	0.0025	229.0	8.46%	3102.9	6.84%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-3	-7.141e+00	0.0029	295.0	10.90%	4122.9	9.09%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-3	-7.131e+00	0.0029	291.0	10.75%	4061.7	8.96%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-3	-7.111e+00	0.0029	290.0	10.71%	4047.3	8.93%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-6.756e+00	0.0042	69.0	2.55%	781.8	1.72%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-2	-6.736e+00	0.0042	424.0	15.66%	6170.2	13.61%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-2	-6.731e+00	0.0042	174.0	6.43%	2305.8	5.08%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2	-6.693e+00	0.0043	254.0	9.38%	3522.6	7.77%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-2	-6.680e+00	0.0043	445.0	16.44%	6507.3	14.35%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-6.610e+00	0.0046	82.0	3.03%	967.4	2.13%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-6.361e+00	0.0059	141.0	5.21%	1833.5	4.04%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-6.253e+00	0.0065	55.0	2.03%	605.1	1.33%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-2	-6.251e+00	0.0065	236.0	8.72%	3276.6	7.23%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-2	-6.203e+00	0.0067	142.0	5.25%	1856.5	4.09%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-2	-6.184e+00	0.0068	479.0	17.69%	7094.7	15.65%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-2	-6.179e+00	0.0068	179.0	6.61%	2412.5	5.32%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-2	-6.108e+00	0.0072	351.0	12.97%	5075.5	11.19%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-2	-6.092e+00	0.0073	69.0	2.55%	803.5	1.77%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-2	-5.927e+00	0.0085	221.0	8.16%	3068.4	6.77%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-2	-5.912e+00	0.0086	170.0	6.28%	2292.3	5.06%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-2	-5.903e+00	0.0086	16.0	0.59%	119.1	0.26%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-2	-5.902e+00	0.0086	199.0	7.35%	2733.4	6.03%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-2	-5.894e+00	0.0086	427.0	15.77%	6295.5	13.88%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-5.761e+00	0.0097	287.0	10.60%	4103.0	9.05%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-5.645e+00	0.0108	464.0	17.14%	6909.5	15.24%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-2	-5.617e+00	0.0110	82.0	3.03%	1005.4	2.22%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-2	-5.615e+00	0.0110	108.0	3.99%	1383.7	3.05%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-2	-5.591e+00	0.0112	306.0	11.30%	4413.4	9.73%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-5.521e+00	0.0119	22.0	0.81%	194.5	0.43%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-2	-5.502e+00	0.0120	577.0	21.32%	8738.8	19.27%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-2	-5.458e+00	0.0125	236.0	8.72%	3333.6	7.35%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-2	-5.416e+00	0.0129	592.0	21.87%	8990.9	19.83%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-2	-5.400e+00	0.0131	48.0	1.77%	535.2	1.18%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-2	-5.358e+00	0.0135	683.0	25.23%	10471.6	23.09%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-5.356e+00	0.0135	264.0	9.75%	3776.9	8.33%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-2	-5.328e+00	0.0138	319.0	11.78%	4640.3	10.23%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-2	-5.254e+00	0.0147	515.0	19.02%	7768.2	17.13%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-2	-4.954e+00	0.0197	468.0	17.29%	7047.4	15.54%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-2	-4.949e+00	0.0197	611.0	22.57%	9354.2	20.63%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-2	-4.821e+00	0.0223	365.0	13.48%	5416.3	11.94%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-2	-4.693e+00	0.0251	35.0	1.29%	379.8	0.84%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-2	-4.652e+00	0.0260	145.0	5.36%	1991.3	4.39%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-2	-4.648e+00	0.0260	286.0	10.57%	4182.8	9.22%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-4.495e+00	0.0301	266.0	9.83%	3881.8	8.56%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-4.469e+00	0.0307	66.0	2.44%	822.5	1.81%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-4.459e+00	0.0308	32.0	1.18%	345.5	0.76%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-1	-4.416e+00	0.0319	581.0	21.46%	8936.6	19.71%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-4.410e+00	0.0319	97.0	3.58%	1281.0	2.82%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-4.341e+00	0.0340	489.0	18.06%	7457.6	16.45%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-4.323e+00	0.0344	42.0	1.55%	486.1	1.07%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-4.254e+00	0.0366	537.0	19.84%	8244.2	18.18%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-1	-4.222e+00	0.0376	25.0	0.92%	258.5	0.57%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-4.211e+00	0.0378	181.0	6.69%	2576.9	5.68%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-1	-4.179e+00	0.0388	605.0	22.35%	9358.8	20.64%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-4.157e+00	0.0394	1122.0	41.45%	17868.9	39.40%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-4.027e+00	0.0443	37.0	1.37%	426.5	0.94%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-4.027e+00	0.0443	37.0	1.37%	426.5	0.94%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.985e+00	0.0460	67.0	2.48%	858.8	1.89%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-1	-3.980e+00	0.0460	108.0	3.99%	1471.2	3.24%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.915e+00	0.0488	19.0	0.70%	187.0	0.41%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.735e+00	0.0581	102.0	3.77%	1395.5	3.08%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.704e+00	0.0596	563.0	20.80%	8742.3	19.28%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-1	-3.685e+00	0.0603	140.0	5.17%	1981.1	4.37%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-3.677e+00	0.0605	408.0	15.07%	6234.9	13.75%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-3.559e+00	0.0677	118.0	4.36%	1651.5	3.64%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-1	-3.513e+00	0.0705	438.0	16.18%	6740.2	14.86%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-1	-3.457e+00	0.0741	35.0	1.29%	417.6	0.92%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-3.420e+00	0.0765	19.0	0.70%	198.8	0.44%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-1	-3.409e+00	0.0770	380.0	14.04%	5817.6	12.83%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-3.404e+00	0.0770	26.0	0.96%	293.5	0.65%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-3.376e+00	0.0786	66.0	2.44%	873.8	1.93%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-3.260e+00	0.0879	893.0	32.99%	14233.4	31.39%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-3.199e+00	0.0929	265.0	9.79%	3996.1	8.81%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.193e+00	0.0929	59.0	2.18%	778.9	1.72%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-3.174e+00	0.0943	59.0	2.18%	779.2	1.72%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-1	-3.087e+00	0.1023	15.0	0.55%	153.9	0.34%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-3.068e+00	0.1037	148.0	5.47%	2155.3	4.75%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.047e+00	0.1053	128.0	4.73%	1844.5	4.07%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-3.040e+00	0.1055	57.0	2.11%	756.3	1.67%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.969e+00	0.1128	46.0	1.70%	596.4	1.32%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-2.887e+00	0.1217	45.0	1.66%	585.2	1.29%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-1	-2.847e+00	0.1261	286.0	10.57%	4375.4	9.65%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-2.846e+00	0.1261	530.0	19.58%	8337.8	18.39%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-2.773e+00	0.1343	50.0	1.85%	665.1	1.47%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-2.712e+00	0.1422	10.0	0.37%	96.3	0.21%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-2.677e+00	0.1465	193.0	7.13%	2905.1	6.41%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-2.602e+00	0.1570	239.0	8.83%	3650.5	8.05%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-2.593e+00	0.1577	38.0	1.40%	495.8	1.09%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-2.569e+00	0.1607	7.0	0.26%	61.0	0.13%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-2.519e+00	0.1681	684.0	25.27%	10926.5	24.10%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.456e+00	0.1782	102.0	3.77%	1486.9	3.28%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.453e+00	0.1782	58.0	2.14%	804.8	1.77%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-2.433e+00	0.1806	15.0	0.55%	169.3	0.37%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.426e+00	0.1811	236.0	8.72%	3624.3	7.99%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.389e+00	0.1869	147.0	5.43%	2203.4	4.86%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-2.384e+00	0.1870	188.0	6.94%	2858.0	6.30%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-2.322e+00	0.1980	36.0	1.33%	478.2	1.05%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.301e+00	0.2013	64.0	2.36%	906.1	2.00%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.290e+00	0.2026	92.0	3.40%	1343.6	2.96%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-2.277e+00	0.2042	78.0	2.88%	1125.1	2.48%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-2.269e+00	0.2049	170.0	6.28%	2583.6	5.70%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.184e+00	0.2220	1.0	0.04%	2.5	0.01%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.180e+00	0.2220	263.0	9.72%	4094.5	9.03%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.177e+00	0.2220	246.0	9.09%	3819.6	8.42%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.170e+00	0.2221	64.0	2.36%	915.7	2.02%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.116e+00	0.2334	71.0	2.62%	1028.0	2.27%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-2.102e+00	0.2355	195.0	7.20%	3005.4	6.63%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.088e+00	0.2380	388.0	14.33%	6146.2	13.55%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.051e+00	0.2457	81.0	2.99%	1190.1	2.62%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-1.945e+00	0.2720	13.0	0.48%	155.6	0.34%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.939e+00	0.2724	7.0	0.26%	72.7	0.16%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.923e+00	0.2755	196.0	7.24%	3045.8	6.72%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.919e+00	0.2756	375.0	13.85%	5964.9	13.15%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.892e+00	0.2819	234.0	8.64%	3666.8	8.09%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.882e+00	0.2835	22.0	0.81%	289.9	0.64%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.881e+00	0.2835	206.0	7.61%	3213.9	7.09%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.832e+00	0.2954	14.0	0.52%	173.8	0.38%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.799e+00	0.3040	26.0	0.96%	353.3	0.78%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.738e+00	0.3218	620.0	22.90%	10041.3	22.14%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.724e+00	0.3249	35.0	1.29%	495.8	1.09%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.704e+00	0.3298	223.0	8.24%	3516.6	7.75%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.640e+00	0.3502	67.0	2.48%	1004.4	2.22%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.628e+00	0.3531	54.0	1.99%	799.4	1.76%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.605e+00	0.3599	133.0	4.91%	2068.3	4.56%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.595e+00	0.3619	92.0	3.40%	1408.2	3.11%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.526e+00	0.3862	86.0	3.18%	1319.9	2.91%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.511e+00	0.3904	62.0	2.29%	936.3	2.06%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.510e+00	0.3904	45.0	1.66%	666.5	1.47%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.510e+00	0.3904	191.0	7.06%	3025.9	6.67%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.505e+00	0.3904	38.0	1.40%	556.4	1.23%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.493e+00	0.3911	47.0	1.74%	699.8	1.54%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.480e+00	0.3943	8.0	0.30%	97.2	0.21%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.475e+00	0.3947	50.0	1.85%	748.6	1.65%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.455e+00	0.4013	137.0	5.06%	2153.8	4.75%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.437e+00	0.4070	67.0	2.48%	1023.0	2.26%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.385e+00	0.4271	173.0	6.39%	2752.0	6.07%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.374e+00	0.4298	6.0	0.22%	71.1	0.16%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.361e+00	0.4338	99.0	3.66%	1548.0	3.41%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.345e+00	0.4389	23.0	0.85%	331.9	0.73%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.335e+00	0.4416	45.0	1.66%	680.6	1.50%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.315e+00	0.4487	65.0	2.40%	1003.3	2.21%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.282e+00	0.4621	26.0	0.96%	382.6	0.84%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.266e+00	0.4680	35.0	1.29%	527.0	1.16%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.248e+00	0.4745	370.0	13.67%	6025.7	13.29%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.247e+00	0.4745	78.0	2.88%	1221.8	2.69%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.236e+00	0.4745	26.0	0.96%	385.5	0.85%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.236e+00	0.4745	26.0	0.96%	385.5	0.85%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.232e+00	0.4746	2.0	0.07%	18.9	0.04%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.230e+00	0.4746	16.0	0.59%	228.0	0.50%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.213e+00	0.4800	61.0	2.25%	949.4	2.09%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.126e+00	0.5220	14.0	0.52%	202.1	0.45%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.111e+00	0.5278	90.0	3.32%	1434.3	3.16%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.104e+00	0.5294	7.0	0.26%	94.7	0.21%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.072e+00	0.5448	13.0	0.48%	189.9	0.42%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.050e+00	0.5548	14.0	0.52%	206.4	0.46%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.031e+00	0.5630	14.0	0.52%	207.9	0.46%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.019e+00	0.5680	162.0	5.98%	2635.7	5.81%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.012e+00	0.5700	3.0	0.11%	36.4	0.08%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-9.779e-01	0.5875	13.0	0.48%	194.4	0.43%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-9.604e-01	0.5957	5.0	0.18%	68.6	0.15%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-9.257e-01	0.6145	78.0	2.88%	1263.5	2.79%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-9.153e-01	0.6187	145.0	5.36%	2374.4	5.24%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-8.934e-01	0.6301	329.0	12.15%	5440.5	12.00%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-8.797e-01	0.6365	80.0	2.96%	1303.3	2.87%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-8.455e-01	0.6563	28.0	1.03%	448.7	0.99%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-8.124e-01	0.6760	207.0	7.65%	3429.9	7.56%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-8.046e-01	0.6788	30.0	1.11%	485.6	1.07%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-7.894e-01	0.6868	175.0	6.46%	2901.8	6.40%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-7.868e-01	0.6868	4.0	0.15%	58.7	0.13%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.825e-01	0.6868	996.0	36.79%	16632.6	36.68%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-7.794e-01	0.6868	69.0	2.55%	1136.7	2.51%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.732e-01	0.6882	133.0	4.91%	2204.1	4.86%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-7.598e-01	0.6951	146.0	5.39%	2424.1	5.35%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-7.538e-01	0.6969	15.0	0.55%	241.1	0.53%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-7.525e-01	0.6969	179.0	6.61%	2977.2	6.57%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-7.354e-01	0.7050	416.0	15.37%	6946.7	15.32%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-7.130e-01	0.7185	6.0	0.22%	95.0	0.21%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-6.989e-01	0.7262	58.0	2.14%	965.1	2.13%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.809e-01	0.7369	4.0	0.15%	62.9	0.14%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-6.721e-01	0.7409	22.0	0.81%	365.3	0.81%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.600e-01	0.7473	34.0	1.26%	568.4	1.25%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.467e-01	0.7548	86.0	3.18%	1444.5	3.19%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-6.338e-01	0.7620	9.0	0.33%	149.8	0.33%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.206e-01	0.7695	76.0	2.81%	1281.7	2.83%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.839e-01	0.7957	14.0	0.52%	238.6	0.53%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.839e-01	0.7957	130.0	4.80%	2199.1	4.85%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-5.672e-01	0.8037	236.0	8.72%	3989.8	8.80%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.529e-01	0.8126	171.0	6.32%	2899.6	6.39%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.412e-01	0.8195	258.0	9.53%	4369.4	9.64%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-5.362e-01	0.8209	98.0	3.62%	1671.6	3.69%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.302e-01	0.8231	14.0	0.52%	243.1	0.54%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.291e-01	0.8231	18.0	0.66%	312.1	0.69%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-5.191e-01	0.8269	83.0	3.07%	1421.3	3.13%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-5.132e-01	0.8291	169.0	6.24%	2878.4	6.35%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-4.942e-01	0.8423	194.0	7.17%	3307.7	7.29%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-4.917e-01	0.8423	36.0	1.33%	626.1	1.38%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-4.863e-01	0.8435	13.0	0.48%	230.9	0.51%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-4.790e-01	0.8470	8.0	0.30%	143.9	0.32%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-4.737e-01	0.8488	17.0	0.63%	301.8	0.67%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-4.660e-01	0.8526	11.0	0.41%	197.0	0.43%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.507e-01	0.8630	41.0	1.51%	719.1	1.59%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-4.377e-01	0.8716	39.0	1.44%	687.8	1.52%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-4.160e-01	0.8879	46.0	1.70%	812.3	1.79%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-4.126e-01	0.8881	2.0	0.07%	38.2	0.08%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.125e-01	0.8881	67.0	2.48%	1174.2	2.59%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.013e-01	0.8926	36.0	1.33%	642.6	1.42%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-3.964e-01	0.8942	31.0	1.15%	556.4	1.23%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-3.962e-01	0.8942	92.0	3.40%	1607.9	3.55%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-3.895e-01	0.8949	16.0	0.59%	294.9	0.65%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.821e-01	0.8987	42.0	1.55%	750.2	1.65%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.791e-01	0.8987	43.0	1.59%	768.3	1.69%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-3.789e-01	0.8987	277.0	10.23%	4762.5	10.50%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.777e-01	0.8987	14.0	0.52%	260.2	0.57%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.683e-01	0.9001	37.0	1.37%	666.6	1.47%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.650e-01	0.9004	24.0	0.89%	439.4	0.97%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.606e-01	0.9016	57.0	2.11%	1015.0	2.24%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-3.496e-01	0.9088	188.0	6.94%	3264.3	7.20%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.285e-01	0.9254	6.0	0.22%	120.9	0.27%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-3.154e-01	0.9348	172.0	6.35%	3007.2	6.63%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-3.120e-01	0.9352	319.0	11.78%	5513.2	12.16%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.983e-01	0.9452	10.0	0.37%	198.6	0.44%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-2.969e-01	0.9452	21.0	0.78%	398.8	0.88%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.720e-01	0.9647	15.0	0.55%	294.2	0.65%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.659e-01	0.9677	7.0	0.26%	146.7	0.32%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.617e-01	0.9690	290.0	10.71%	5053.6	11.14%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-2.613e-01	0.9690	2.0	0.07%	47.7	0.11%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.610e-01	0.9690	444.0	16.40%	7672.5	16.92%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.546e-01	0.9690	83.0	3.07%	1501.5	3.31%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.495e-01	0.9695	23.0	0.85%	444.2	0.98%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.398e-01	0.9761	35.0	1.29%	662.9	1.46%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.349e-01	0.9781	221.0	8.16%	3892.2	8.58%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.183e-01	0.9915	25.0	0.92%	488.5	1.08%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.144e-01	0.9926	58.0	2.14%	1079.4	2.38%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.948e-01	1.0000	1.0	0.04%	29.3	0.06%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.933e-01	1.0000	47.0	1.74%	892.9	1.97%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.879e-01	1.0000	54.0	1.99%	1019.3	2.25%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.725e-01	1.0000	20.0	0.74%	409.3	0.90%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.686e-01	1.0000	17.0	0.63%	354.4	0.78%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.600e-01	1.0000	51.0	1.88%	978.2	2.16%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.597e-01	1.0000	187.0	6.91%	3363.9	7.42%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-1.538e-01	1.0000	104.0	3.84%	1921.2	4.24%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.501e-01	1.0000	1.0	0.04%	33.8	0.07%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.383e-01	1.0000	178.0	6.58%	3226.7	7.12%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.328e-01	1.0000	329.0	12.15%	5839.8	12.88%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.280e-01	1.0000	379.0	14.00%	6703.5	14.78%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-1.257e-01	1.0000	6.0	0.22%	150.1	0.33%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.216e-01	1.0000	104.0	3.84%	1945.1	4.29%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.214e-01	1.0000	280.0	10.34%	5010.1	11.05%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.053e-01	1.0000	18.0	0.66%	395.5	0.87%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-8.909e-02	1.0000	24.0	0.89%	518.0	1.14%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-8.486e-02	1.0000	7.0	0.26%	183.1	0.40%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-7.711e-02	1.0000	93.0	3.44%	1792.2	3.95%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-6.806e-02	1.0000	39.0	1.44%	816.9	1.80%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-6.582e-02	1.0000	11.0	0.41%	275.9	0.61%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.303e-02	1.0000	249.0	9.20%	4565.5	10.07%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.055e-02	1.0000	97.0	3.58%	1885.5	4.16%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-5.893e-02	1.0000	773.0	28.56%	13569.6	29.92%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.824e-02	1.0000	40.0	1.48%	855.2	1.89%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-4.681e-02	1.0000	4.0	0.15%	132.1	0.29%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.658e-02	1.0000	7.0	0.26%	201.8	0.44%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-4.633e-02	1.0000	13.0	0.48%	330.0	0.73%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-4.616e-02	1.0000	262.0	9.68%	4832.6	10.66%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-4.376e-02	1.0000	213.0	7.87%	3979.6	8.78%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.217e-02	1.0000	101.0	3.73%	1989.0	4.39%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.055e-02	1.0000	17.0	0.63%	416.6	0.92%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-3.934e-02	1.0000	266.0	9.83%	4922.9	10.86%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.861e-02	1.0000	93.0	3.44%	1850.7	4.08%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-3.643e-02	1.0000	501.0	18.51%	9007.3	19.86%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.293e-02	1.0000	19.0	0.70%	466.0	1.03%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.953e-02	1.0000	38.0	1.40%	844.8	1.86%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.675e-02	1.0000	9.0	0.33%	262.9	0.58%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.993e-02	1.0000	126.0	4.65%	2504.8	5.52%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.725e-02	1.0000	50.0	1.85%	1104.0	2.43%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.634e-02	1.0000	1.0	0.04%	69.3	0.15%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.552e-02	1.0000	10.0	0.37%	301.8	0.67%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-8.615e-03	1.0000	327.0	12.08%	6172.6	13.61%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-7.953e-03	1.0000	96.0	3.55%	2021.9	4.46%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-7.304e-03	1.0000	213.0	7.87%	4163.3	9.18%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-7.286e-03	1.0000	46.0	1.70%	1072.5	2.36%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.102e-03	1.0000	6.0	0.22%	228.8	0.50%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.166e-03	1.0000	69.0	2.55%	1537.8	3.39%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-3.855e-03	1.0000	88.0	3.25%	1917.2	4.23%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.584e-03	1.0000	4.0	0.15%	191.1	0.42%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-3.248e-03	1.0000	49.0	1.81%	1171.4	2.58%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-3.053e-03	1.0000	97.0	3.58%	2102.6	4.64%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.311e-03	1.0000	10.0	0.37%	356.5	0.79%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.245e-03	1.0000	17.0	0.63%	538.4	1.19%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.074e-03	1.0000	98.0	3.62%	2184.2	4.82%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.059e-03	1.0000	49.0	1.81%	1223.3	2.70%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-2.740e-04	1.0000	135.0	4.99%	2971.6	6.55%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.670e-04	1.0000	101.0	3.73%	2320.3	5.12%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.400e-05	1.0000	32.0	1.18%	1022.6	2.26%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-3.000e-06	1.0000	59.0	2.18%	1669.7	3.68%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.000e-06	1.0000	1.0	0.04%	223.6	0.49%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.000e-06	1.0000	113.0	4.17%	2836.6	6.26%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-0.000e+00	1.0000	38.0	1.40%	1277.5	2.82%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-0.000e+00	1.0000	58.0	2.14%	1727.8	3.81%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-0.000e+00	1.0000	107.0	3.95%	2783.2	6.14%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-0.000e+00	1.0000	178.0	6.58%	4287.8	9.46%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-0.000e+00	1.0000	52.0	1.92%	1675.9	3.70%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	316.0	11.67%	6956.0	15.34%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-0.000e+00	1.0000	134.0	4.95%	3459.6	7.63%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-0.000e+00	1.0000	218.0	8.05%	5168.4	11.40%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-0.000e+00	1.0000	107.0	3.95%	2944.1	6.49%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-0.000e+00	1.0000	141.0	5.21%	3704.2	8.17%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-0.000e+00	1.0000	160.0	5.91%	4144.9	9.14%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-0.000e+00	1.0000	153.0	5.65%	4014.9	8.85%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	228.0	8.42%	5617.8	12.39%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	155.0	5.73%	4200.7	9.26%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	6.7	0.01%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	11.3	0.02%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	209.0	7.72%	6207.7	13.69%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	26.8	0.06%