snATAC-Seq visualisation¶

UMAP projection¶

UMAP projection of the 79,515 ATAC cells and the 9 clusters

_images/CARE_Portal_snATAC_1.png

single-cell genome browser¶

An interactive UCSC singlec-cell browser session can be found here: http://ns104190.ip-147-135-44.us/data_CARE_portal/snATAC/ucsc_browser/ds=snATAC which visualises the opened and signficant promoters per cell-type.

Also, an interactive UCSC singlec-cell browser session can be found here: http://ns104190.ip-147-135-44.us/data_CARE_portal/snATAC/ucsc_browser/ds=snATACMotif which visualises the opened and signficant promoters per cell-type.

Genome browser tracks¶

Cell subtype browser track¶

A genome browser track is available at this address: http://ns104190.ip-147-135-44.us/data_CARE_portal/snATAC/IGV/IGV_bigwig.html

Chamber browser track¶

A genome browser track is available at this address: http://ns104190.ip-147-135-44.us/data_CARE_portal/snATAC/IGV/IGV_chamber_bigwig.html

snRNA-Seq visualisation¶

UMAP projection¶

UMAP projection of the 12 clusters

_images/CARE_Portal_snRNA-cropped.png

single-cell genome browser¶

An interactive UCSC singlec-cell browser session can be found here: http://ns104190.ip-147-135-44.us/data_CARE_portal/snATAC/ucsc_browser/ds=snRNA

Genome browser tracks¶

A genome browser track is available at this address: http://ns104190.ip-147-135-44.us/data_CARE_portal/snRNA/IGV/IGV_bigwig.html